Glycine soja (wild soybean): 114421108
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Entry
114421108 CDS
T06057
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114421108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114421108
03041 Spliceosome [BR:
gsj03041
]
114421108
03009 Ribosome biogenesis [BR:
gsj03009
]
114421108
03016 Transfer RNA biogenesis [BR:
gsj03016
]
114421108
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114421108
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114421108
Spliceosome [BR:
gsj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114421108
Complex C
U4/U6.U5 tri-SnRNP related factors
114421108
Ribosome biogenesis [BR:
gsj03009
]
Eukaryotic type
Pre-60S particles
Helicases
114421108
Transfer RNA biogenesis [BR:
gsj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114421108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
114421108
NCBI-ProteinID:
XP_028242707
LinkDB
All DBs
Position
8:complement(2222065..2231188)
Genome browser
AA seq
976 aa
AA seq
DB search
MEIESPTLGKRREPELPVTETTSMPKKARSSERTCVHEVAVPSSYVSSKDEELHGTLSNP
LHNGPMAKSYPFTLDPFQQVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSFRDKQRVI
YTSPLKALSNQKYRELSQEFTDVGLMTGDVTLSPNATCLVMTTEILRGMLYRGSEVLKEV
AWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCHV
VYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFLKLQDTFTKQNLGDGKRGGKGAG
RGGKGGNASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNSQEEKDTV
EHVFQNAVLCLNEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALF
ATETFAMGLNMPAKTVIFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMID
EQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQYEKAL
PDMEKRVSKLEQEVALLDASGEAQVSEYHKLKLEIAQLEKKIMSKIIRPEIILYFLVPGR
LIKVREGGTDWGWGVVVNVVKKPSGGGYIVDTLLHCSPVSNENSSRPKPCPPRPGEKGEM
HVVPVQLPLISALGQLRVSIPPDLRPLEARQSILLAVQELGNRFPQGLPKLNPVKDMDVR
DSEIVELVNQVEELEKKLFTHPMHKHQDMDQIKCFERKAEVNHEVQQLKTKMRDSQLQKF
REELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA
LASCFIPGDKSTEQIQLRTELARPLQQLQDSARRIAEIQHECKLDINVNEYVDSTVRPFL
MDVIYSWSKGANFADVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEADLEKKFAAA
SESLRRGIMFANSLYL
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggagatagagtcgccaacactgggaaagcgaagagaacccgagctcccagtaacagag
accacttcaatgccgaagaaagctcgcagttcggaacgcacgtgcgtgcacgaggtggcc
gttccgagcagctacgtctcgagcaaggacgaagagctccacggaaccctctcgaaccct
ctccacaacggtcccatggctaagtcctatcccttcaccctcgaccccttccagcaggtc
tccatcgcctgcctggagcgcaacgagtccgtcctcgtctccgcccacacctccgccggc
aagaccgccgtcgccgagtacgccatcgccatgtccttccgcgacaagcagcgcgtcatc
tacacctcccctctcaaggccctcagcaaccagaagtaccgcgaactcagccaggagttc
accgacgtcggcctcatgaccggcgacgtcacgctctctccgaacgccacgtgtctcgtc
atgaccaccgagattctccgtggaatgctctacagaggatccgaggttttaaaagaagtg
gcctgggttatatttgatgagattcattacatgaaggatcgcgaacgaggcgttgtttgg
gaagagagtataatctttctgccaccggcgattaagatggttttcctttcggctactatg
tccaacgccaccgagtttgctgagtggatttgtaatattcacaagcagccttgtcatgtt
gtgtacactgattttaggcccacgcctttgcagcactatgtgttccccatgggggggagt
gggttgtatttggttgtggatgagaatgaacagttcagggaggataattttttgaagctg
caggatactttcacgaagcagaatttaggggatgggaagaggggtgggaaaggcgctgga
agaggtggtaaaggtggcaatgcctctggtggttctgatatttacaagattgttaagatg
atcatggaacggaaattccaacctgttatcatctttagcttcagtagaagagagtgtgaa
caacatgcaatgtctatgtccaagcttgacttcaactctcaagaagaaaaggatacagtg
gagcatgtttttcaaaatgcagtgctctgtttgaatgaagaagacaggaacttacctgct
attgagctgatgttgccacttcttcagcgaggaattgctgtccatcattctggacttctt
cctgtcatcaaagaattggtcgagcttcttttccaggaaggtcttgtaaaagccctcttc
gctactgaaacatttgcaatgggtttaaatatgccggcgaaaactgtcatattcactgct
gttaagaaatgggatggtgatagtcaccgttatattggatctggtgaatatatacagatg
agtggaagggctgggcgtcgtggcaaagatgaacgtggaatttgtatcataatgatagat
gaacagatggaaatgaataaccttaaagacatggttttgggtaaacctgctcctttagtt
agtacattcaggcttagctactactcaattttaaatttgatgagccgtgcagaaggccag
ttcacagccgaacacgtaataagaaattcatttcatcaatttcaatatgaaaaggcctta
ccagatatggagaaaagggtgtcaaagctagagcaggaagtagccttgcttgatgcttca
ggggaggctcaagtatctgaatatcataagctaaaactggaaatagcacagctggagaag
aagattatgtcaaaaataataaggcctgaaataattctttattttcttgtccctggtcga
ttgatcaaagtaagagaaggtggaactgattggggctggggtgttgttgtcaatgttgtt
aagaaaccttctggtggtggttatatagttgatactttacttcattgttcacctgtttca
aatgaaaacagttctcggccaaaaccatgcccgcctcgccctggagagaaaggtgaaatg
catgtggttcctgttcaattaccattaatctctgcccttggtcaactgagggtatccata
cctcccgatcttcgacccttggaagcaaggcaaagtatattgcttgctgtacaggagctg
ggcaaccgttttccccaaggtcttccaaagcttaaccctgtaaaggacatggacgtacgg
gactcagaaatagttgaactagtgaatcaagttgaggaacttgagaaaaaattgttcact
catcctatgcataagcatcaagatatggatcaaattaaatgctttgagaggaaagcagaa
gtgaatcatgaagttcagcaactgaagacaaaaatgcgggattcccagctacaaaaattt
cgtgaagaacttaagaatcgctcacgagtcttaaagaaacttggtcatattgatgctgat
ggtgtagttcagttgaagggacgagcagcctgcttgattgacacaggcgatgaactcctt
gtcactgaattaatgtttaatggtacttttaatgaccttgaccatcatcaagttgctgcc
cttgcaagttgtttcataccaggagataagtcaactgagcagatacaattgagaacagag
cttgctaggcctctgcaacagcttcaagatagtgcaagaaggatagctgagatacaacat
gaatgcaaattggatataaatgtgaatgagtatgtggattcaaccgtaagaccattcttg
atggatgtgatatactcatggtcaaagggagcaaattttgccgatgttatacaaatgact
gacatctttgaagggagtattattcggagtgctagaagacttgatgagtttttgaatcag
ttgcgtgctgctgctaatgcagttggagaggctgacttggagaagaagtttgcagctgca
agtgaaagccttcgacgaggtattatgtttgctaattctctgtatctgtga
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