Glycine soja (wild soybean): 114421238
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Entry
114421238 CDS
T06057
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114421238
09122 Translation
03013 Nucleocytoplasmic transport
114421238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114421238
03041 Spliceosome [BR:
gsj03041
]
114421238
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
114421238
Spliceosome [BR:
gsj03041
]
Complex C
Other components
EJC/TREX
114421238
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114421238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
FapA
LIM_bind
Motif
Other DBs
NCBI-GeneID:
114421238
NCBI-ProteinID:
XP_028242884
LinkDB
All DBs
Position
8:complement(3808500..3827541)
Genome browser
AA seq
1870 aa
AA seq
DB search
MSLPPIECVYVTEECIREWRSGNPALKVSQPVPMLRFLYELCSTMVRGELPFQKCKVALD
SVIFSDKASIEKIASYFADIVTQMAQDHTMSGEFRSRLIKLARWLVESEMVPVRLLQERC
EEEFLGEAELIKIKAQELKGKEVRVNTRILYQQTKFNLLREESEGYAKLVTLLCRDSEAP
TQKSSAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDDDVFIELIPIFPKSHASQILG
FKFQYYQRMEVNSPVPFGLYRLTALLVKQDFIDLDSIYAHLLPRDDEAFEHYNTFSSKRL
DEANKIGRINLAATGKDLMDDEKQGDVTIDLFAAIDMETDAIEERTTELQSSQTLGLLTG
FLSVDDWYHAHLLFECLSPLNAVEHIQICDSLFRLIKKSISSAYDVIRQTHLQNPGSSTG
GSTDVMDVDNSSGYSSFIDLPKELFQMLACTGPYLYRDTVLLQKVCRVLRGYYLSALELV
SHGNGVLNPQLQVPGNPHLHLKEARLRVEDALGACLLPSLQLIPANPAVGQEIWELLSLL
PYEVRYRLYGEWEKDDERIPMLLSARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP
MTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLS
DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENL
TEEQLDAMAGSETLRYQATSFGVTRNNKALIKSTSRLRDALLPKDEPKLAIPLLLLIAQH
RSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPASNYGILIPSLNDLVHLYHL
DPEVAFLIYRPVMRLFKSPGNPDVCWPLDDKNAASDASMNFESDPLDHSASMVLNLGSAQ
NPISWSYLLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIAKLHANLKS
LEELSDNSSSAITKRKKEKERIQESLDRLISELHKHEENVASVRRRLSHEKDKWLSSCPD
TLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMI
CCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFI
KVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSD
EREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSVTKSSAGNSATVQSGINLN
VSQTESASGKHVDSGNIVKDQAMRTKTADGRSERTESITVTKSDTGHIKLKSSSMVNGLD
AQSSLAPSSVQSGTSKSMENPKQVEESINRASDEHGTRTTELRTSAKRSVPAGSLSKPSK
QDPVKEDGRSGKPVARTSGSSSSDKELQTHALEGRYTGTTNVPSSNGNTISGSTKGSNPP
VKISLDGPGNESKAEVGVAKSSDIRASMVKDDGNDITDNPRGASSRVVHSPRYENTGVTS
KSNDKVQKRASSAEEPDRLGKRRKGDVELRDFETEVRFSEREKMMDPRFADDKSGPEEHG
LYRAGDKPLERAKDKGNERYERDHRERMDRLDKSRGDDFVAEKPRDRSIERYGRERSVER
MQERGSDRSFNRLPEKAKDERNKDDRNKLRYNDASVEKSHGDDRFHGQSLPPPPPLPPNV
VPQSVGAGRRDEDVDRRYGATRHSQRLSPRHEEKERRRSEETVVSQDDAKRRKEDDFRDR
KREEIKVEEREREREKANILKEELDLNAASKRRKPKREHLPTGEPGEYSPVAHPPSSAGI
GMSLAYDGRDRGDRKGPIMQHPSYVDESSLRIHGKEVASKLNRRDSDPLYDREWEDEKRQ
RADQKRRHRK
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttccacccatagagtgtgtatacgtaactgaagaatgtattcgggaatggagg
agtggcaaccctgccctcaaggtttcccaacctgttccaatgcttcgctttctctacgag
ctctgctcgaccatggttcggggcgaattgccctttcagaagtgtaaagtagcgttagat
tctgttatattttcagataaagcttccatcgagaaaatagcttcatattttgctgatata
gtcacccagatggctcaagatcatacaatgtcaggagagttccgttctcgtctcatcaaa
ctggcaagatggcttgtggaatctgaaatggttccagttaggctacttcaagaacgttgt
gaggaagaatttttgggggaggctgagttgatcaaaattaaggctcaggaattgaagggt
aaagaggtcagagttaatacccgtattctctatcagcaaaccaaattcaaccttctcaga
gaagagagtgagggctatgcaaagctggttactcttctttgtcgggactctgaagcacct
actcaaaaatcatctgcagcaacaattggcattattaagtcattaattggccattttgat
ttggatccaaatcgcgttttcgatattgttctcgagtgttttgaactgcagcctgatgat
gatgtgtttatagaattgattcctatttttccaaagtctcatgcttcacagattcttgga
tttaagtttcaatattatcaacgcatggaagtcaacagtcctgttccatttgggctctat
agacttacagccttgctggtgaagcaagattttattgatcttgatagcatatatgctcat
ctacttcccagggatgatgaggcatttgagcattacaatactttctcttccaagcgcctt
gatgaggctaataaaattggaagaataaaccttgctgcaactggaaaagatctaatggat
gatgagaaacagggggatgtcactatagatctctttgctgctatagacatggaaacagac
gcgattgaagagcgaacaactgagcttcagagcagtcagactttgggcttgcttactggc
tttctttcagtggatgattggtatcatgcacatctactatttgaatgcctttcaccactc
aatgcagtggaacatattcaaatatgtgacagtttgtttaggcttatcaagaagtcaatt
tcttcagcatatgatgttattcgtcagacacatcttcaaaatcctggatcgtccacggga
ggcagcactgatgttatggatgtagataactcttcaggatacagttctttcatagatctt
ccaaaggaactttttcagatgcttgcttgtactggaccttatctctatcgtgatactgta
ctgttgcagaaggtttgtagggtgttgagaggttattacctttctgctcttgagcttgta
agtcatggcaatggtgtcttgaatcctcaattacaagttcctggaaatcctcacctacat
cttaaggaggcaaggctaagggtggaggatgctttaggagcatgtctactaccatctctg
cagttaattcctgccaatccagctgttggccaggaaatttgggaactgttgagtcttctt
ccttatgaggtgcgatatcgtttgtatggtgaatgggaaaaagatgatgagcgcattcct
atgctcttatctgcaagacaaactgccaagttggacactagacgtattttgaaacggctg
gcaaaggaaaatttgaagcagctgggtcggatggttgcaaagttagctcatgccaaccct
atgactgtccttcgaacaattgttcatcagattgaggcttatagagacatgattactcct
gtagtggatgcatttaagtacttaactcagcttgagtatgatatattggaatatgttgtg
attgagcgtttggcgcttggtggacgtgataagttaaaggatgatggccttaatttgtca
gattggcttcaatctcttgcttcattttggggccacctgtgtaagaagtacccatcaatg
gaattacggggccttttccagtatcttgtgaatcagttaaaaaaggggcagggaattgag
cttgttctactgcaggagcttattcaacaaatggctaatgtccagtacacggagaacttg
actgaggaacagttggatgcaatggcagggagtgagactctcagatatcaagcaacatct
tttggtgtaactcggaataataaggcattgataaagtcaactagcagacttcgtgatgca
ttacttccaaaagatgaaccaaagttggcgatccccctgttactgcttattgctcaacat
cgttctttggttgttatcaatgcagatgcaccctacattaagatggttagtgagcagttt
gatagatgtcacggaactctccttcaatatgtggaatttctttgcagtgcagtcactcca
gcatcaaattatggcattcttattccctccctcaatgacctggtccacctttaccacctg
gaccctgaggttgctttcttgatatatcgccctgtaatgaggcttttcaagtctcccggg
aatcctgatgtttgctggcccttggatgataaaaatgctgcaagtgatgcatctatgaac
tttgagtctgatcctttggatcattctgctagtatggttctaaatcttggctctgctcaa
aatcctataagttggtcgtatcttcttgatactgttaaaaccatgttgccttcgaaagca
tggaatagcttatctcctgatctttatgctacgttttggggtcttacattatatgatctg
tatgttccaaaaaatcgttatgagtcagaaatagccaaattgcatgctaatcttaaatct
ttggaggagctttctgacaattcaagctcagcaatcacgaagaggaagaaagaaaaagaa
agaattcaagaatctcttgatcgtctgatcagtgaactgcataaacatgaagagaatgtt
gcatctgttcgtagacggctttctcatgaaaaagacaaatggttaagttcctgtcctgac
accttaaagatcaacatggagtttcttcagcgctgtatatttccacgctgtactttcagt
atgcccgatgcagtttattgtgctatgttcgtacacacgcttcattcccttggaaccccc
ttttttaacacagtcaaccacatagatgttctgatttgtaagaccctacaaccaatgata
tgctgctgcactgaatacgaggcaggcaggcttggcaggtttctgtatgagactttgaag
attgcttactattggaagagtgatgaatctatttatgaacgtgagtgtggaaacatgcct
ggcttcgctgtttattatagatatccaaatagtcagcgagttacatatgggcagttcatt
aaggtacactggaagtggagtcaaagaatcactcgtttactaattcagtgtctagaatct
actgagtacatggaaattagaaatgctcttataatgttgacaaaaatttctagtgttttc
cctgttactcggaagagtgggatcaaccttgaaaagcgggtagctaagattaaaagtgat
gaaagagaggatcttaaggtgttggcgactggtgttgcagcagcattggctgctaggaag
ccttcttgggttactgatgaagaattcggtatgggttatcttgagttgaaacctgcacca
tctgtgactaaatcttcagctggaaactcagcaactgtacaaagtgggataaatctcaat
gtttcacaaactgaatctgccagtggaaaacatgtggactctggaaacatagtcaaagat
caggcaatgagaacaaaaactgcagatggcaggtctgagagaactgaaagcattacagtg
acaaaatctgatactggccacataaaactcaagagtagttcaatggtgaatggattggat
gctcaatcatccttggccccgtcttctgtacaatctgggacgtcaaaatctatggaaaac
ccaaagcaagtggaagaatccataaatagagcatcagatgaacatgggacaagaactact
gagttaagaacttcggcaaaacgttcggtgcctgctggttcactatcaaagccctcaaaa
caagatcctgtaaaagaggatggtagatctggaaaacctgttgctagaacttctggttcc
tcgagcagtgacaaggaactacaaacccatgcattggagggaagatacactggaactacc
aatgtaccttcttcaaatggtaacacaatctcaggttctacaaaaggttcaaatccacca
gtcaagatttcattggatggccctggtaatgaatccaaggcagaggttggagttgccaag
tcttctgatattagagcttctatggtgaaggatgatggaaatgatattactgacaaccca
agaggagcctcttctcgcgtagttcattcccctaggtatgaaaacacaggagttacttca
aagtctaatgataaagttcagaagagagctagttctgctgaagaaccagacagactaggt
aaacgacggaaaggggatgtggagctaagagattttgaaactgaagttagattctctgaa
agagagaagatgatggatcctagatttgctgatgacaaatcgggaccagaggaacatggt
ctgtacagggcaggtgataagccattggaaagggcaaaagacaaaggcaacgaaagatat
gaaagggatcacagggaaagaatggaccgtctggataagtctcgtggtgatgactttgtt
gcagaaaaacctagggataggtcaattgaaagatatggaagagaacgatctgttgagaga
atgcaagagaggggtagtgataggagttttaatagactccctgagaaagctaaggatgaa
agaaacaaggatgatagaaataaattacgatacaatgatgcatcagtagaaaaatctcat
ggtgatgatcgcttccatggtcaaagcttgcctccaccaccccctttacctcctaatgtg
gttcctcaatctgtaggagctggtaggcgtgatgaagatgttgatagaaggtatggagct
acaaggcactctcagagactttctccaaggcatgaagaaaaagaacggagacggtctgaa
gagactgtggtttctcaggatgatgccaaacgccgaaaagaagacgattttcgagatcga
aaacgtgaggaaattaaggtggaagagagggagcgggaaagagagaaagcaaacattctg
aaggaagagttggatttaaatgccgcatccaagagacgtaaacccaagagggagcattta
ccaactggtgaacctggtgagtactcaccagtggcccatccaccttcttccgctggtatt
ggcatgtcactagcatatgatggaagggatagaggagacagaaagggacccatcatgcag
catccaagttacgtagatgaatcaagtctcaggatccacggtaaagaggtggccagcaag
ttgaatcgccgtgattcagatcccttgtatgaccgtgaatgggaggatgagaagagacaa
agagctgatcagaagcgaaggcaccgaaagtaa
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integrated database retrieval system
