Glycine soja (wild soybean): 114421250
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Entry
114421250 CDS
T06057
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114421250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114421250
03012 Translation factors [BR:
gsj03012
]
114421250
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114421250
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114421250
Translation factors [BR:
gsj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114421250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
nSTAND3
AAA_19
AAA_16
Dicer_dimer
ATPase
NPHP3_N
ABC_tran
Myosin_head
NACHT
Motif
Other DBs
NCBI-GeneID:
114421250
NCBI-ProteinID:
XP_028242900
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All DBs
Position
8:3968303..3977692
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AA seq
1177 aa
AA seq
DB search
MTMAYSGIFQGFIRFKAMSRLRSTPLRPSLPSIPLHRTAIRLRHHSCSFALQVVKNTRQR
TLKLPFWHQRSSTYGRFAYQDVSSDESDVEFASSPSHNQQLGDSTHENIDEWRWKLTMLM
RNKDDQEVVSREKKDRRDFEQLSTVASRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPQ
REVVLPLGVHKEVDAHLLAHLSQKARNKWGSLSDSLHKSRDSRSIPANEGMHEQPEPMTH
NSVVKEKILERKSLQLLHRQHDWQESPEGQKMLEFRRSLPAFKEKDAFLRVISQNQVIVV
SGETGCGKTTQLPQYILESETEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESV
GYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLK
ELLPHRPDLRLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTGYRLTP
SNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVAEFKGYSLRTRDSLSCWCPDS
IGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQVHPLLGDHSQVLILACHGSM
ASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDIGKAKETSYDALNNTPCLLP
SWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKTLQL
GSISEFLSRALQPPEPLSVQNAIDYLKIIGALDENENLTVLGHKLAMLPVEPKLGKMLIL
GAIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKAQLAARGYSDHLALIRAYEGWRD
AEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVNNNSETYNTWSHEEHLLRA
VICAGLFPGISSVVNKDKSIALKTMEDGQVLLYSSSVNGCVSRIPFPWLVFNEKVKVNSV
FLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQ
KKLLDPMLETQSHSELLSAVRLLVSEDHCDGRFVFGRQVLPQSKKETNSKTGGGAEGKNY
KNHLQAFLNRAGHDSPTYKTKELKNNQFRTTVVFNGLNFVGQPCSSKKLAEKSAAAEALL
WIKGDGHSSDDIDHASVLLKKSNKKSRKNSFSGAKWS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgactatggcatattccggcatatttcagggcttcatcagattcaaagccatgtcgcgc
cttcgttccactcctctcagaccttctcttccctccattcctcttcaccgcaccgccatt
cgcctccgccatcactcatgctccttcgcgcttcaagtcgtcaagaacacgcgccagagg
accctcaagttgccgttttggcaccaacgcagctccacctacggtcgtttcgcctaccag
gatgtctccagtgacgaatccgatgttgaattcgcctcttctccctctcacaaccaacaa
ctgggtgattcaactcacgagaacattgacgagtggagatggaagctcaccatgcttatg
cgcaacaaagacgaccaagaagtggtgtccagggagaagaaggaccgtcgcgatttcgag
caactttccactgtagcttccaggatgggtttgtatagccggcagtatgcaagagttgtt
gtgtttagcaaggcgcctttgccaaattaccgccctgatttggatgataagcgtccgcaa
agagaggtagtcttaccacttggtgttcataaagaagtagacgctcatctccttgcccat
ctttcacaaaaggctagaaacaagtggggttctttgagtgattccttgcataaatcaagg
gattctagaagcatcccagccaatgaaggaatgcatgaacaaccagagcccatgacccat
aatagtgtggtcaaggagaaaatccttgaacgaaaaagtttgcaactgcttcatcggcaa
catgattggcaggagtctcctgaagggcaaaagatgcttgaatttcgtagaagtcttcct
gctttcaaagagaaggatgcatttctgagagttatttcacagaatcaggtcattgttgtc
tcaggtgaaactggttgtggtaagaccacacaacttcctcaatacatattagaatctgag
actgaagcggcacgtggagctgtatgtaacatcatttgtactcagcctagaagaatatct
gctatgtctgtttctgaaagagttgcagcagaacgtggggagaaattgggagaatctgtt
ggatacaaagttcgtctggagggtatgaaagggagagatactcgtcttcttttttgcacc
acgggtgtattattgcggagactgctggtggataggaatttaaaaggtgtaactcatgtt
attgttgatgaaattcatgaacgtggaatgaacgaagattttcttctcattgtcctgaag
gaacttctccctcatcgccctgatttgaggttgattttgatgagtgctaccttaaatgct
gagcttttttcttcatactttaatggtgctccaactatgcatattcctggttttacattt
ccagttcgagcacattttcttgaggatattctggaaaggactggatatcggttgacacct
tctaatcaaattgatgactatggtcaagagaaaacatggaaaatgcaaaagcaagctcaa
gctttcagaaaaagaaagagccagattgcttctgctgttgaggatgctttagaagttgca
gaatttaaggggtatagcctacgcactcgagattcgttgtcctgctggtgccctgactca
attggttttaaccttattgaacatgtgctttgccacattgttaagaatgaaaggccaggt
gctgttttggtttttatgactggttgggatgatataaactctttgaaggatcaacttcaa
gttcatcctttgttgggtgatcatagccaagtattgattcttgcatgccatggctccatg
gccagctctgagcagaggttgatatttgaaaatcctgaaggaggggtgaggaaaattgtt
ctagcaactaacatggctgagactagtattaccatcaatgatgttgtctttgtggttgac
attggaaaagcaaaagaaacatcatatgacgccttaaataacactccttgtttgcttcca
tcttggatctcaaaagctgctgcccggcagagaagaggaagggctggtcgtgttcagcct
ggtgaatgctaccatctttatcccagatgtgtttatgatgcttttgctgattatcaattg
ccagagcttttgagaacacctttgcagtccttatgtctgcaaatcaaaactctacaactt
ggaagcatctctgagtttttatctagagctctacagccaccagagcctctatcggttcaa
aatgctattgattatttgaagattattggggccttagacgagaatgaaaatttaacagtt
ttagggcacaaattggcaatgcttcctgtggagcccaaacttggcaagatgctcattttg
ggagcaatcttcaagtgtttggatcccataatgacagttgttgctggtcttagtgtaaga
gatccatttgtgatgccgtctgacaagaaggatcttgcagagtctgccaaagcccaatta
gctgctcgtggctatagtgatcatctggcactcatccgggcttacgagggttggagagat
gctgaagctcagcaagctggttacgagtactgctggcggaattttctttcttctcaaaca
cttagggccattgactctcttcgaaagcaattcttttatttgctcaaagatattggtctg
gtcaataacaattctgaaacctacaatacatggagtcatgaagagcatctactccgagca
gtcatttgtgcgggtttgtttcctggaatatcctctgttgtgaacaaagataagtcaata
gcgctgaaaacaatggaggatggtcaggttcttttgtattctagctctgtaaatggttgt
gtctcccgaattccattcccatggttagtgtttaatgaaaaggtgaaagtgaattcagta
tttcttagggattcaactggaatatcagattcagtgcttctcttatttggtgggaatgta
tccagaggtggactagatggtcacctgaaaatgttgggagggtatttggagtttttcatg
aaaccagaattagccaagacttacttgagcttaaagatggaactggaagaactgatacag
aaaaaacttttggatcccatgttggaaacacaatcgcatagtgagctgctttctgctgtt
agattgttggtatcagaggatcattgtgatgggagatttgtctttggtcgccaggtccta
ccacaatcaaagaaggaaacaaactccaaaactggtggtggagctgagggtaaaaattat
aaaaatcatcttcaagcattccttaacagggctggacatgattcaccaacttacaaaaca
aaggagctgaaaaacaaccaattccgtactactgtcgtatttaatgggttgaattttgtt
ggtcagccatgcagcagcaaaaaattagcagaaaaatctgctgctgctgaggctctatta
tggataaaaggggatggccattcatctgatgatattgaccatgcatcagtgcttttgaaa
aagagcaacaagaaaagtaggaaaaattcgtttagtggtgctaaatggagttga
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