Glycine soja (wild soybean): 114422573
Help
Entry
114422573 CDS
T06057
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114422573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114422573
03012 Translation factors [BR:
gsj03012
]
114422573
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114422573
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114422573
Translation factors [BR:
gsj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114422573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
nSTAND3
ATPase
ABC_tran
T2SSE
AAA_16
Motif
Other DBs
NCBI-GeneID:
114422573
NCBI-ProteinID:
XP_028244806
LinkDB
All DBs
Position
8:complement(18795629..18825796)
Genome browser
AA seq
1161 aa
AA seq
DB search
MRNSKLCAASLLIARAKSLQLHHRHVRHCFPPFSSSSATSISLFRFHHPWLSSLCNAKSL
ITTRLFSSYYSLEQFSDDEYDCDFENQQASSTVANVDEWKWKLSMLLRSEKDQEIVSRDR
KDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRV
EGLLQEYLDRLQLNSAKTTDSLDDVNSTNQVKDINMDENADSFVDESVMEKVLQKRSLRM
RNMQRAWQESPEGRKLLEFRKSLPSFKEKQGLLQAIAHNQVIVISGETGCGKTTQLPHYV
LESEVESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMKGKNTHL
LFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSA
TLNAELFSNYFGGAPTFHIPGFTYPVRAHFLEDILEMTGYKLTSFNQIDDYGQEKLWKTQ
KQLAPRKRKNQITALVEDALSNSSFENYSSRARDSLTSWAPDCIGFNLIEAVLCHICRKE
RPGAVLVFMTGWEDISSLKDQLKAHPLVGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIR
KVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGR
VQPGECYHLYPKCVYDAFSEYQLPELLRTPLNSLCLQIKSLQVESIGGFLSAALQAPEPR
AVQNAIDFLKMIGALDEQENLTNLGKFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVAGL
SVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLS
AQTLQAIHSLRKQFSFILKEAGLVDAEANVINKLSHNQSLVRAVICSGLFPGIASVVHRE
TSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFG
GALSNGIQAGHLKMLDGYVDFFMDPNLADSFLKLKEELHKLIQKKLEDPSIDIHKEGKYL
MLAVQELVSGDQCEGRFVFGRESRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKY
KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDKSPP
DVTDNMLKLLGKRRKSKRGHG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaattcaaagttgtgtgcagcgtctcttcttatagcacgggccaagtccctccaa
cttcaccaccgccacgtgcgtcactgcttccctccattttcttcttcttctgcaacctca
atctcactcttcaggtttcatcacccttggctctcttccttgtgcaacgcgaaatcactc
atcaccacgcgcctcttctccagctactactccctcgaacagttctccgatgacgaatac
gactgcgacttcgagaatcaacaggcatcgtctacagtggctaatgtggatgagtggaaa
tggaaactcagcatgttgttgcgcagtgaaaaggatcaggagattgtatctagagacaga
aaagataggagggactatgaacagatagctaaccttgccaaaagaatggggctttacagt
gagttgtttggaaaagtggttgttgcaagcaaggtgcctcttcctaactaccgtccagat
ttggatgacaaacgtccacaaagagaggtggtgattccactaagcttgcaaaggagggtt
gagggtttgttgcaggaataccttgataggcttcagttgaattctgcaaagacaactgac
agcctagatgatgtgaattccaccaatcaagttaaagatataaacatggatgaaaatgct
gattcttttgtggatgaatctgttatggaaaaggttctccagaagaggagtttgaggatg
cgtaatatgcaaagagcttggcaggaatcacccgagggcaggaagttgctggaattccgg
aagtctctaccatcattcaaggagaagcaaggtttacttcaagctatagcacataatcag
gtgatagttatatctggagagactggctgtggtaaaaccactcaacttcctcactatgta
ttagaatcagaggttgagtctggtcgtggagcattttgtagcattatttgcacacagcct
cgaaggatctctgctatggcagtggcagagagagtgtcagctgagcgaggagagcctctt
ggtgaaacagttggcttcaaagttcgattagaaggaatgaaaggaaaaaacacccatctg
ctattttgtaccagtggtatattacttagaaggctgttgagtgatcgaaacctgaatggt
ataacccatgtttttgtggatgaaattcatgaaagaggcatgaatgaagacttcttactg
attgtgttaaaggatctgcttccacgtcgtcgggatttaagattggttttaatgagtgcc
accttgaatgctgagcttttttcgaattattttggaggtgctcctacatttcatattccg
ggtttcacttatccagttagagcacactttttagaagatattttggaaatgacgggatat
aaattgacttccttcaaccaaattgatgattacggtcaagagaaactgtggaagacacaa
aagcaactagcaccacggaagaggaaaaaccagatcactgctcttgttgaggatgctctt
tctaattcaagctttgagaactatagctccagggcacgtgattcactaacatcttgggca
cctgactgcattggttttaatctcattgaggctgttctatgccatatatgtcggaaggaa
cgaccaggtgctgtcttagtatttatgactgggtgggaggatataagctctttaaaagat
cagcttaaagcacatcctcttgtaggagatcccaatagggttctgcttctaacatgtcat
ggttcaatggcaacttcagaacagaaactcatatttgagaaaccacctccaaatataagg
aaagtgatacttgctacaaatatggctgaggcaagtattacaatcaatgacatagttttt
gtggttgattgtggaaaagcaaaagagaccacttatgatgctttaaataacacgccatgt
cttctaccttcttggatatcacaagcatctgcacgtcagagaagaggtagggctggtcgt
gtgcagccaggagaatgttaccacctttacccaaaatgtgtttatgatgccttttctgaa
tatcaacttcctgaactactgagaacacctttgaattctctatgcttgcaaataaaaagt
ttgcaggttgagagcataggagggttcttatcagcagctttacaggcaccagagccacgg
gctgttcaaaatgctattgattttctcaagatgattggagcattagatgaacaagaaaat
cttacgaatcttgggaagtttctctctatgcttcctgttgatcccaagcttggaaaaatg
ttaataatgggagctatatttcgatgctttgatcctgttcttacaatagttgctggcctt
agtgtcagggatccttttcttttgccccaagacaagagggatttagcagggacagcgaag
tctaggttttctgctaaagattacagtgatcatatggctcttgttcgagcatatgaagga
tggaaagatgcagaaagagaagggtcggcttacgagtactgctggaggaattttctatca
gcccaaactcttcaggctattcattcacttcggaaacagtttagctttatcttgaaagaa
gctggcttggtagatgcagaagctaacgtcattaacaaattgagtcacaatcaatctctt
gtgcgtgcagtcatatgttctgggctctttcctggcatagcatcagtggtgcacagggag
acatccatgtcatttaaaacaatggatgatggccaggttttattgtatgctaattcagtg
aatgcacgttaccagaccattccttacccttggttggtttttggtgagaaagtcaaggtc
aatgctgtttttatccgtgattccactggtgtatctgattcaatacttatcctttttggt
ggtgctctaagtaatgggatacaggctgggcatctgaaaatgttagatgggtatgttgac
ttcttcatggatcctaatttagctgacagctttttgaagcttaaggaagagctccataag
cttatccaaaagaagctggaagatcctagcattgacattcacaaggaagggaaatacttg
atgcttgctgttcaggagctggtttcaggggatcaatgcgaaggaagatttgtatttggc
cgtgaaagccggaagcctaaggcctccaatgatgaaaacaaattcacaaaagatggaaca
aatcccaagagcttgctgcagactctgttgatgcgagcagggcactccccacccaaatac
aaaacgaaacatcttaagacaaatgagtttagggcattggtggagtttaagggaatgcaa
tttgttggcaaaccaaagagaaacaagcaacttgcagaaagggatgctgctatagaggca
ttggcttggttgactcacacctctgacaataaccagcatgaagatgataagtctcctcct
gatgtaactgacaacatgctaaaactcctagggaagcgtagaaaatcaaagcgaggccat
ggttga
DBGET
integrated database retrieval system
