Glycine soja (wild soybean): 114422934
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Entry
114422934 CDS
T06057
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114422934
09123 Folding, sorting and degradation
03018 RNA degradation
114422934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114422934
03041 Spliceosome [BR:
gsj03041
]
114422934
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114422934
mRNA degradation factors
5'-3' decay
Lsm complex
114422934
Spliceosome [BR:
gsj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
114422934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
114422934
NCBI-ProteinID:
XP_028245299
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Position
8:complement(8228493..8231734)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
TDQTRNLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGS
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcagaaaagaaacggttttggaccttgcaaagtttgtagacaaaggcgttcaa
gttaagcttactggtggaagacaagtgacagggactctgaaagggtatgatcaattgctt
aaccttgtcctagatgaagctgtagagtttttaagagatcctgatgatcctctcaaaact
actgaccagaccagaaatcttggcttaattgtttgtagaggaactgctgtgatgcttgtg
tccccaactgatggtacagatgagatcgccaacccctttatgcagccagatgggtcctaa
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