Glycine soja (wild soybean): 114423597
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Entry
114423597 CDS
T06057
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114423597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114423597
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114423597
mRNA degradation factors
5'-3' decay
Decapping complex
114423597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
PEP5_VPS11_N
Beta-prop_EML_2
Beta-prop_EDC4L
WD40_MABP1-WDR62_2nd
Med13_C
Motif
Other DBs
NCBI-GeneID:
114423597
NCBI-ProteinID:
XP_028246218
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All DBs
Position
8:complement(45629132..45638346)
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AA seq
1345 aa
AA seq
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MASPNNHNPPPPTIPFDMHSFFNPQPPPPPSSNPNPNPNHNPSSSYPPPFHFPNFDLPLP
PHPHHRSISFPTQPIPPPSNPNAGARLMALLGNPSPAPPQPPPPEFVPVSSSAVLAAASA
AAAALTRLPSSKVPKGRHLAGELVTYDVDVRLPGEVQPQLEVAPITKYGSDPNPVLGRQI
AVNKSYICYGLKQGNIRVLNIHTAVRSLLRGHTQRVTDLAFFAEDVHLLASVGTDGRVYM
WKITEGPDDEDKPQITANIVIAVQIVGEEKVEHPQICWHCHKQEILIVGMGKHVLRIDTT
KVGNGEAFVVDDPLRCPVDKLIDGVQLVGTHDGEVTDLSMCQWMTNRLVSASQDGTIKIW
EDRKTQPLAILRPHDGNPVFSATFFTAPHQPDHIVLITAGPQNREVKLWVSASDEGWLLP
SDTESWKCTQTLELKSSAQPSKDAFFNQVAALSHAGLLLLANAQRNAIYAVHLEYGSNPE
STRMDYIAEFTVTMPILSFTGTSDILPHGEHIVQVYCVQTQAIQQYALDLAQCLPPPYEN
VGLEKSDSSVSRDPITVEGFHSLDSSAGRTTEMSLASSAPKTMLQTSSNEGGLVARYPLS
SGHVEAPISRGISSSNTEAKPATLPPSSSDADIVCIPSSPLPLSPRLSRKLSDIRSPQSN
LSDHVGDHPVNDYSIDRQMDTIHRNLSDPLNSDSKNDEKKMKQDDISSVLNPSVLFKQPT
HLITPSEITKAGSSSETNIIDRKNEGEAKIQDVVDVGNAEVEVKVVGETRSNQSDEFGGQ
GSQQPSVADSKEKLFCSQASDLGIEMARECCSISEDTYLMEEPGQLDSTTGGDSLAQPLD
ASEDGLQDFAKDAHEKVSDSSTSVAVPPSPAPNAKGKRQKGKNSQPAGPSSSFPSACNST
DSFNEPIGNSSLPSAENAFPQILAMQESLNQLLTMQKEMQKQMTMMVAVPVTKEGRRLEA
ALGRNMEKAVKSNSDALWARIQEENAKSEKLLRDRIQQVTGLISNFMNKDLPVILEKTVK
KEMASVGQAVVRAMSPAVEKIISSSIVESFQRGVGDKAVNQLDRSVNSKLEATVARQIQA
QFQTTGKQVLQEALKSSFETSVVPAFEMSCKAMFEQVDATFQKGMVEHSTAVQQRLESAP
TSLAMTLRDSINSASSITQTLSREVLEGQRKLVTLAATRTNSGTLNTLPVQLNNGPLLHE
KVEVPLDPTQELARLISERKYEEAFIGALHRSDVSIVSWLCTQVDLHGLLSMVPLPLSQG
VLLSLLQQLACDINNDTPRKIAWLTDVAAAINPSDLTIAMHTRSIFEQVYQILNHQRSLP
TMTGADLSSIRLLLHVINSMLMTCK
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggcttccccaaacaaccacaaccctcctccacccaccattcccttcgacatgcactcc
ttcttcaacccccaaccaccaccaccaccttcctctaaccctaacccaaaccctaaccat
aacccttcctcctcctaccctcccccctttcacttccccaacttcgacctccctctccct
ccccacccccaccaccgctccatctccttccccacccaacccatccctcccccttccaac
cccaacgccggcgcccgcctcatggccctccttggtaacccctcccccgccccgccgcag
cccccgccgcccgagttcgtccccgtctcctcctctgccgtcctcgccgctgcctccgcc
gctgccgcggccctcacgcgcctccccagcagtaaggtccccaagggaagacacttggcc
ggggagctcgtgacttacgacgtcgacgtgaggctgcccggcgaggtccagccccagctc
gaggtggctccgattacgaaatacgggtcggatcctaacccggttctagggaggcagatt
gccgtgaataagtcgtatatatgctatggcttgaaacaggggaacattagggtgcttaat
attcacactgctgtcaggtccttgctcagaggccacactcagagggtcacagacttggcg
ttctttgctgaagatgttcatctcttggctagtgttggcacagatggccgtgtctacatg
tggaagataactgaaggcccagatgatgaagataagcctcaaattactgccaatattgtt
attgctgttcaaatagtgggggaggagaaagttgaacatcctcaaatttgctggcactgc
cacaaacaagagattttgatagttggtatgggaaaacatgttttaaggattgataccaca
aaagttggaaatggtgaagcctttgtggtagatgatcctctgagatgtcctgtggataag
ctcattgatggggttcagctggtaggcacacatgacggggaggtgactgatttgtcgatg
tgccaatggatgaccaatcgattggtatctgcgtcacaagatggcacgataaagatctgg
gaagatcgcaagacacaaccacttgcgattttgagaccacatgatgggaatccggttttt
tctgctacattttttactgctcctcaccagcctgatcatattgtccttatcacagcagga
ccacaaaatcgggaagtaaagctttgggtctcagcaagtgacgaaggttggctgctccca
agtgacactgaatcatggaaatgcactcagacactggagttgaagagttcagctcaacct
tctaaggatgcattctttaatcaagttgcagcattgtctcatgcaggtctgcttttactt
gcaaatgcccagaggaatgctatatatgctgtgcatttagaatatggttctaatccagaa
tcaacacgcatggattatatagccgagtttactgtgaccatgcccattctgagttttact
gggaccagtgatatattgcctcatggtgaacatattgttcaggtttattgtgttcagaca
caggctattcagcagtatgctttggatctggctcagtgcttgcctccgccatatgaaaat
gtgggactagagaagtcagattccagtgtttcacgcgatcctattactgttgaaggattc
cactctttagattcttctgcaggtagaacaactgaaatgtctttagccagttctgctccc
aaaacaatgttacaaacaagtagtaatgagggtggacttgtggcacgataccctttaagc
tctggccatgttgaggcacctatttctagaggaatcagcagttcaaatactgaagctaaa
cctgctacattacctccttccagtagtgatgctgatattgtttgtattccatcttcacct
cttcctttgagcccaaggttatctaggaaactctctgatatcagaagtccacaatccaac
ttgagtgatcatgttggggaccatcccgttaatgattattcaatagacagacaaatggat
acaattcacaggaacttgtctgacccattgaatagtgattcaaagaatgatgagaagaaa
atgaagcaggatgacatttctagtgtacttaatccttctgtcttgtttaagcaaccaact
catctaattacaccatctgagatcaccaaagctggttcctcctctgagactaatataatt
gataggaaaaatgagggagaagcaaagatccaggatgttgttgatgtaggtaatgctgaa
gtggaagtgaaagtggtgggtgagacaagatctaatcaaagtgatgaatttggtgggcaa
gggtctcaacaaccttcagttgctgatagtaaagaaaaattattttgctctcaggcttca
gatcttggtattgagatggcccgggaatgctgttcgatatctgaggatacataccttatg
gaggaacctgggcaacttgattcaacaacaggaggggactcactggctcaaccgcttgat
gccagtgaggatggactccaagactttgcaaaagatgcccatgaaaaggtttctgactca
tctacatctgtggcagtgccaccatctcctgcacctaatgcaaaagggaaaaggcagaag
ggtaaaaattctcaaccagcaggcccatcttcctcatttccaagtgcgtgcaattcaact
gattcattcaatgaaccaattggaaattctagcctcccatctgctgaaaatgctttcccc
caaattctggcaatgcaagaatcgctcaatcagttattgacaatgcaaaaagagatgcag
aagcaaatgacaatgatggttgctgttccagtgacaaaagaaggtagaaggcttgaggct
gccctagggagaaacatggaaaaagctgtcaagtccaacagtgatgctttgtgggctcga
attcaggaggagaatgcaaaaagtgaaaagttgttacgagaccgtatccagcaagttaca
ggtttgattagtaactttatgaataaggatctaccagtgatactggagaaaacagtaaag
aaggaaatggcttcagttgggcaagcagtagtacgtgcaatgtctcctgctgtggagaaa
ataatatcttcttctattgtggagtccttccagagaggagtgggtgataaggcagtgaac
caacttgatagatcagttaattcaaaacttgaagctactgtagctaggcaaatccaagcg
caatttcagacaactggcaaacaggtgcttcaggaggcactcaaatccagttttgaaaca
tcagtggttcctgcatttgagatgtcgtgtaaagccatgtttgagcaagtggacgctaca
tttcagaaaggcatggttgaacattcaactgctgtgcagcaacgccttgaatctgcaccc
acttcgttggcaatgacactaagggattctattaattcagcatcatcaattactcaaacc
ttgagtagagaagtgcttgagggccagagaaagctagtgacgctcgcagctacaagaaca
aactctggcacattaaatactctgcctgtccagctaaacaatggtcctttacttcatgaa
aaggtcgaggtgcctctagatcccacacaagagctagctaggttgatttctgaacggaaa
tatgaggaggctttcattggagctctacatagaagtgatgtatccattgtatcttggtta
tgtactcaggttgatttacacggacttttgtcaatggttcctcttcctttaagccaaggt
gtactgctttcacttctgcagcaattggcctgtgatattaacaacgatacaccgcgaaag
attgcgtggttgacagatgtggctgctgccataaatccgtcagacctgacgattgcaatg
cacacacgatccatctttgagcaagtctatcagatactgaatcatcaacgtagcttgcct
acaatgactggagctgatctctctagtatccgtcttttattgcatgtcataaactccatg
cttatgacatgtaaataa
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