Glycine soja (wild soybean): 114423598
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Entry
114423598 CDS
T06057
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114423598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114423598
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114423598
mRNA degradation factors
5'-3' decay
Decapping complex
114423598
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CA109-like
Ge1_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
PEP5_VPS11_N
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_WDR75_2nd
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
114423598
NCBI-ProteinID:
XP_028246219
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Position
8:complement(45643415..45653206)
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AA seq
832 aa
AA seq
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MSTIQSLDTLIFYFFIYLQSPNPNPNPNPNPSSSYPPFHFPNFDLPLPPHPHHRSISFPT
QPIPPPSNPNAGARLMTLLGNTSPTPPQPPPLEFVPFSSSAVLAAASAASAALTRLPSSK
VPKGRHLAGELVTYDVDVSLPGEVQPQLEAAPITKYGSDPNPVLGRQIAVNKSYICYGLK
QGNIRVLNIHTAVRSLLRGHTQRVTDLAFFAEDVHLLASVGTDGRVYVWKITEGPDDEDK
PQITSNIVIALQIVGEEKVEHPQICWHCHKQEILIVGMGKHVLRIDTTKVGNGEAFVVDD
PLRCPVDKLIDGVQLVGTHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKTQPLAILR
PHDGNPVFSATFFTAPHQPDHIVLITAGPQNREVKLWVSASDKGWVLPSDTESWKCTQTL
ELKSSAQPSMDAFFNQVAALSHAAGLLLLANAQRNAIYAVHLEYGSNPESTRMDYIAEFT
VTMPILSFTGTSDILPHGEHIVQVYCVQTQAIQQYALDLAQCLPPPYENVGLENSDSSVS
RDPITVEGFHSLDSSAGRTTEMSLASSAPKTMLQTSSNEGGLVARYPLSSGHVEAPISRG
ISSSNIEAKPATLRSVSLSPRLIAGSSLVSSGLTMKAIVKKFQSKFRKVREAMSRWDKLQ
SCLISQFRNAFHIVDRLQVLQNSNNYGVLNCASGMKDALLVKQIESLRNILVSMRKTLEE
FHCIVLSLDKIHHDSRQQVKGGSCILNMKQLQQQIGIKPSLIYCLDSLMFIHEIYNSEYL
LKSSVISALSEIALKPSDSDLGALQQLLVDQPNLQTVEVQFVFDVIFAEELS
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgatacaatctctagatacattaattttttatttttttatttatttacagtct
cctaaccctaaccctaaccctaaccctaacccttcctcctcctaccctccctttcacttc
cccaacttcgacctccctctccctccccacccccaccaccgctccatctccttccccacc
caacccatccctcccccttccaaccccaacgccggcgcccgcctcatgaccctccttggt
aacacctcccccaccccgccgcagcccccgccgctcgagttcgtccccttctcctcctct
gccgtcctcgccgctgcctccgccgcttccgcggccctcacgcgcctacccagcagtaag
gtccccaagggaagacacttggccggggagctcgtgacttacgacgtcgacgtgagtctg
cccggcgaggtccagccccagctcgaggcggctccgattacgaaatacgggtcggatcct
aacccggttctggggaggcagattgccgtgaataagtcgtatatatgctatggcttgaaa
caggggaacattagggtgcttaatattcacactgctgtcaggtccttgctcagaggccac
actcagagggtcacagacttggcattctttgctgaagatgttcatctcttggctagtgtt
ggcacagatggccgtgtctacgtgtggaagatcactgaaggcccagatgatgaagataag
cctcaaattacttccaatattgttattgctcttcaaatagtgggggaggagaaagttgaa
catcctcaaatttgctggcactgccacaaacaagagatattgatagttggtatgggaaaa
catgttttaaggattgataccacaaaagttggaaatggtgaagcctttgtggtagatgat
cctctgagatgtcctgtggataagctcattgatggggttcagctggtaggcacacatgac
ggggaggtgactgatttgtcgatgtgccaatggatgaccaatcgattggtatctgcgtca
caagatggcacgataaagatctgggaagatcgcaagacccaaccacttgcgattttgaga
ccacatgatgggaatccggttttttctgctacattttttactgctcctcaccagcctgat
catattgtccttatcacagcgggaccacaaaatcgggaagtaaagctttgggtctcagca
agtgacaaaggttgggtgctcccaagtgacactgaatcatggaaatgcactcagacattg
gagttgaagagttcagctcaaccttctatggatgcattctttaatcaagttgcagcattg
tctcatgcagcaggtctgcttttacttgcaaatgcccagaggaatgctatatatgctgtg
catttagaatatggttctaatccagaatcaacacgcatggattatatagccgagtttact
gtgaccatgcccattctgagttttactgggaccagtgatatattgcctcatggtgaacat
attgttcaggtttattgtgttcaaacacaggctattcagcagtatgctttggatctggct
cagtgcttgcctccgccatatgaaaatgtgggactagagaattcagattccagtgtttca
cgcgatcctattactgttgaaggattccactctttagattcttctgcaggtagaacaact
gaaatgtctttagccagttctgctcccaaaacaatgttacaaacaagtagtaatgagggt
ggacttgtggcacgataccctttaagctctggccatgttgaggcacctatttctagagga
atcagcagttcaaatattgaagctaaacctgctacgttacggtcggtttccctctcaccc
aggcttattgctggctcatcactggtcagttcaggattgacaatgaaagcgatagttaaa
aaatttcagtcaaaattcaggaaagttagggaagcaatgagtcgatgggataagcttcaa
tcttgcttaatttctcagtttaggaatgctttccatattgttgataggttgcaggtgctt
caaaattccaacaattatggtgttttaaattgtgccagtggcatgaaagatgctcttttg
gtaaagcagattgaatctttgaggaacatcttggtttccatgcgaaagactctggaagaa
tttcattgtattgtcttatctcttgacaaaattcaccatgatagtagacaacaagtgaaa
ggtggttcttgtattctgaacatgaaacaattgcagcaacaaattggcatcaaacctagt
cttatctattgcttggatagcctgatgtttatacatgagatatacaactctgagtattta
ttaaagtcatcagtgatctcagcactatcagaaattgccttgaagcccagtgacagtgat
cttggtgcacttcagcaactcttggttgatcaacccaatctccaaactgtggaagttcaa
tttgtatttgatgtgatatttgccgaggaactgagttga
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