Glycine soja (wild soybean): 114423810
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Entry
114423810 CDS
T06057
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114423810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114423810
03041 Spliceosome [BR:
gsj03041
]
114423810
03009 Ribosome biogenesis [BR:
gsj03009
]
114423810
03016 Transfer RNA biogenesis [BR:
gsj03016
]
114423810
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114423810
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114423810
Spliceosome [BR:
gsj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114423810
Complex C
U4/U6.U5 tri-SnRNP related factors
114423810
Ribosome biogenesis [BR:
gsj03009
]
Eukaryotic type
Pre-60S particles
Helicases
114423810
Transfer RNA biogenesis [BR:
gsj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114423810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
114423810
NCBI-ProteinID:
XP_028246508
LinkDB
All DBs
Position
8:complement(47613952..47621923)
Genome browser
AA seq
981 aa
AA seq
DB search
MGSLKRKSPEEPSSSTLQPLHDCVHHVSYPDGYNNVHASSSSPTHTTTSEPAKNFPFPLD
PFQSKSISCLENGESVMVSAHTSAGKTVVALYAIAMSLRNGQRVVYTSPIKALSNQKYRE
FKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSELTREVAWIVFDEVHYMRDRE
RGVVWEESIVLSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHVVYTDYRPTPLQHYLF
PSGGDGLYLVVDEKGKFREDSFQKSLNALIPATEGDKKKENGKWQKGLVLGRSGEESDIF
KMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDNEKDNIEQIFCSAMDMLSDDD
KKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKT
VVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKMEPSTAKNMVKGA
ADSLNSAFHLSYNMILNQMRCEDGDPENLLRNSFFQFQADRAIPDLEKQIKSLEEERESI
VIEEENSLKDYFNLLEQHRALNKEIRDIVLSPRHCLPFLQPGRLVSLKCTSSDEDLPLIF
IEDQLTWGLVINFERVKSVSEDDASIKPEDASYIVDVLTRCVVRKDKIGKKSIKIVPLKE
VGEPLVVSVPISQINTISSLRLYIPKDLLPLEARENTLKKVLETLTRFGEKGLPLLDPEE
DMKIQSSSYKKASRRIEALESLFEKHEIAKSPLIKQKLKVFQRKQELTAKIKSIKKTLRS
SSALAFKDELKARKRVLRRLGYATSDNVVELKGRVACEISSADELTLTELMFNGVLKDIK
VEEMVSLLSCFVWQEKIHDAAKPREELDFLFMQLQDTARRVAQLQLECKVEIDVESFVKS
FRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGETQLEA
KFEEAVSKIKRDIVFAASLYL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggggtcactaaagagaaagtccccagaggagccttcaagttcaactttgcaaccactc
catgactgtgtgcaccatgtctcatatccagatggttacaacaacgtccacgcttcttct
tcttctccaactcacactactacttcagaacccgccaagaacttccccttccctctcgac
ccttttcagtccaaatccatttcttgcctcgaaaacggcgagtccgtcatggtctctgca
cacacctctgctgggaaaaccgtggtggcattgtatgctattgccatgtccctccgtaat
ggccagcgcgtggtctacacttcccctatcaaggccctcagcaaccagaagtacagagaa
ttcaaggaagaattctccgacgttggtttgatgaccggagacgtcacaattgatcccaat
gcttcttgcttggtcatgactaccgaaatctggcgtagcatgcaatacaaaggctctgag
ctcactagggaggtagcttggattgtttttgatgaggtccattacatgcgtgatcgtgag
aggggtgtggtttgggaagagagcattgttttgtcccccaagaattcacgtttcgtcttc
ctctctgccactgtccccaatgccaaagagtttgctgattgggtggcgaaggtgcaccaa
cagccttgtcatgtcgtttatacagattaccgaccaactcccctccagcattatcttttc
ccttctggaggtgatggtctgtatttggttgtcgacgaaaagggaaagtttcgtgaagac
agttttcagaaatctttgaatgctctcattcctgccactgagggtgacaagaagaaagaa
aatggcaagtggcaaaaaggtttggtgcttggtagaagtggtgaagaaagtgacatattc
aagatggtgaaaatgatcattcagcgtcaatatgaccctgtcatactcttcagctttagc
aaaagggagtgtgagtttcttgcaatgcagatggcaaaaatggatcttaatggggataat
gagaaggataatattgaacaaatattttgtagtgctatggacatgctttcagatgatgat
aagaaacttccccaggtttcaaacatgctgcccttgctgaaacgtggaataggagtacat
cactctggtttactcccaattctaaaggaagtgattgagatcttatttcaagagggacta
atcaagtgtttgtttgccaccgagacatttagcattggtttgaacatgcctgcaaaaact
gttgttttcacaaatgtccggaagtttgacggggacaagtttaggtggatatccagtgga
gaatatattcaaatgagtggtcgtgctggtcgacgaggcattgatgaacgtggaatatgt
atcctcatggttgatgagaagatggagccttctactgctaaaaatatggttaaaggggca
gctgatagtctaaacagtgcctttcatttaagctacaacatgattttgaaccaaatgcgg
tgtgaagatggtgatcctgaaaatttgctacgtaattccttttttcagttccaagctgat
cgtgccattcctgatcttgagaaacaaataaagagtcttgaagaagagagggaatcaatt
gttattgaagaagaaaacagtctgaaggattatttcaatctgcttgagcagcatagagct
ttgaataaggagattcgtgacattgtgctgtctccaaggcattgtttaccttttttacag
cctggtaggcttgtctctctcaaatgcacatcaagtgatgaagatctacccctcattttt
attgaggatcagttgacttgggggttggtcattaattttgaaagggtcaagagtgtatct
gaagatgatgcaagcataaaacctgaagatgcatcttacattgttgatgttcttacgaga
tgtgttgtgaggaaagataaaattggaaaaaaatctatcaagattgttcctctgaaagaa
gttggagaacctctagtggtttcggttcctatctctcagatcaatacaataagtagtttg
cgtctatatataccgaaggatcttttgccattggaagctcgagaaaacacactgaaaaaa
gtgttggaaactcttactagatttggtgagaaaggattgccacttctagatcctgaagaa
gacatgaagattcaaagcagttcatataaaaaagcatctcgtagaatagaggctttggag
agcctatttgaaaagcatgaaattgcaaagtcaccacttataaaacagaaattgaaagtt
tttcagaggaagcaagaactgactgcaaagataaagtccattaagaaaacattaagatct
tcttctgctttagccttcaaggatgaacttaaggcaagaaagagagttcttcgtaggctc
ggatacgctacaagtgacaatgtggtggaattaaaagggagggttgcttgtgaaattagt
agtgcagatgaactgaccctaacagagctcatgttcaatggtgttttaaaggacataaag
gtggaggaaatggtttctctcctttcttgttttgtctggcaagaaaaaattcatgatgct
gccaaacctcgggaagaacttgattttctttttatgcaattacaagacacggctcggaga
gttgcccaacttcagctggagtgcaaggtggaaattgacgttgagagttttgttaagtcg
tttaggcctgacattatggaggctgtgtatgcttgggcgaaaggttcaaagttctatgag
atcatggaaatcactcaagtctttgaaggtagcttgattagagcaattagacgacttgag
gaagttcttcagcagttaatagaagcagctaagtcaattggggaaactcaacttgaggca
aagtttgaagaagctgtgtccaagatcaagagggacattgtctttgctgcatccctgtat
ttgtag
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