Glycine soja (wild soybean): 114425908
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Entry
114425908 CDS
T06057
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114425908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114425908
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114425908
Spliceosome [BR:
gsj03041
]
Complex A
U2 snRNP components
U2 related factors
114425908
Complex B
114425908
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
114425908
NCBI-ProteinID:
XP_028248703
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All DBs
Position
1:complement(56210778..56215914)
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AA seq
1104 aa
AA seq
DB search
MDEGKHKSRKENHEVKDGDSKRSHRDRDRTGERGKDKNDGRHRDREKRDRESRRPERERS
TDSEDRYDRDREKRKDKDKDVDRERSRDKKRERDRTDRVREKERERERKEDKERIRERER
ERERRDHEREKEKERERGRRVRGREKRREVDSDCSDGESKEQDRKRHRKEDGDYKRERER
SVSKPSRKSEEHEGSPRKKSGEDDSDTKDEEKKPTREEEMEDEQKRLDEEMEKRRRRVQE
WQELRRKKEEAEREKQGEASANEPESGKTWTLEGESDDEEGLGTGKQTGMDVDEDDKPAD
EEPKDVMVVDTDNGTIASDLQDGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSSLS
DKAIDVKPKDKGNGQNRGAQSRKGSNKSIGRIIPGEESDSDYADDEVEKDPLDEDDDEFM
KRVKKTKAEKLSLVDHSKIDYEPFKKNFYIEVKEISKMTPEEAAVYRKQLELKIHGKDVP
KPIKSWHQTGLPSKILETIKKMNFEMPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVL
PMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQ
ISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ
NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLR
LLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSN
VCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEA
RYAPDLLKALELSEQIVPNDLKALAGSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRK
AAKKAQAKEYGFEEEKSDSEDEDEGIRKAGGDISQHSAFAQIIAATKGNAPALPTPILLP
SLQVLPGTGLPLPANDGAARAAAIAALNLQDKLDKIRSEALPEHYEAELEINDFPQNARW
KVTHKETLGPISEWSGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEHSVKSAKADLKR
VLEDITNQALQLPGGTQPGKYSVV
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggatgagggaaagcataaatcgaggaaagaaaatcatgaggtgaaagatggggattct
aagaggagtcaccgtgaccgtgatagaactggagaaaggggtaaggataaaaacgatggg
aggcacagagatagggagaagagggatcgtgagtcccgaagacctgagagagagaggagt
actgattctgaagacaggtatgatagagacagggagaagcgcaaagataaagataaggat
gtggaccgagaaagaagtcgagataagaaaagggaaagggataggacagacagagtaagg
gagaaagaaagagagagggaaagaaaagaagataaggagaggatcagagagagggaaagg
gaaagggaaaggagggatcatgagagagagaaggaaaaggaaagagaaagggggaggaga
gtacgagggagggagaagcgtagggaagttgatagtgattgcagtgatggtgaatctaag
gagcaggacagaaagcggcataggaaagaggatggtgattacaagagagagagggaaagg
agtgtcagcaagccaagcaggaaatctgaggaacatgaaggaagcccaagaaaaaagagt
ggcgaagatgattcagataccaaagatgaagagaaaaaacctacccgtgaagaggagatg
gaggatgaacaaaagaggttggatgaagaaatggaaaagcggaggaggagagttcaagag
tggcaagagctaaggaggaagaaggaagaagcagaaagagaaaaacaaggtgaagcaagt
gctaatgaacctgagtctggaaagacctggacacttgaaggggaatctgatgatgaagaa
ggactgggtactgggaagcagacaggtatggatgtagatgaagatgacaaacctgctgat
gaggagcctaaggatgtgatggtggtagatactgataatgggacaattgcatctgattta
caggatggaactgctggtgctcctgaagatgaggaaatagatccattggatgctttcatg
aattctatggttctacctgaagttgaaaagctaaacaatgctgtgacatcgtcactttct
gataaagccattgatgtaaaacccaaggataaagggaatgggcaaaatcgtggtgcacag
tcaaggaaaggttcaaataagtctattggcagaataattcctggtgaagagtctgactca
gattatgcagatgatgaagttgagaaggatccattggatgaagatgatgatgagttcatg
aaaagagtgaagaagacaaaagccgagaagctttctttagttgaccactcaaagatcgac
tatgaaccattcaagaaaaacttttatattgaagtgaaggagatctcaaagatgactcct
gaagaagctgcagtatacaggaagcagttggagttgaagatacatggaaaggatgtgcca
aagccaataaaatcatggcaccagactggacttcctagcaaaattttggagaccataaag
aagatgaactttgaaatgccgatgcctattcaagctcaggcgctccctgtaatcatgagt
ggtcgagattgcatagggattgctaaaactgggtcaggcaaaacacttgcttttgttctg
ccaatgctgaggcatatcaaggatcagccaccagttgttgctggagatggacctattggg
ctcattatggcccctacaagggaacttgtgcaacagattcacagtgatataaagaaattt
gccaaggtactgggtctcaggtgtgtgcctgtgtatggaggatctggtgttgctcaacaa
attagtgagttgaaacgtggtgctgagatagtggtttgtactccaggtaggatgattgac
atactatgcaccagtagtggaaaaataactaacttgcgtagagtcacttatctggtaatg
gatgaggctgatcgaatgtttgacatgggttttgaacctcaaatcacacgaattgttcag
aatattcgtccagatcgtcaaacagttctgttctctgctactttcccccgtcaggttgaa
atcctggctcgtaaggtcttgaataaacctgttgaaatacaagttggtgggaggagcgtt
gtgaacaaagacataacacagctagttgaggtgaggccagataatgaaaggttccttaga
ctcttagaaatattgggggaatggtatgagaaaggaaagattttgatatttgttcactca
caggagaaatgtgatagtttgttcaaagatctgctcaggcatggttatccatgcctttct
cttcacggggctaaggaccagacagaccgtgaatccacaatatctgattttaaaagcaat
gtctgcaatttgttggttgcaaccagtattgctgccaggggattagatgttaaggagctc
gaattggtgatcaattttgatgttcctaaccactatgaagattatgtacatcgtgttggg
cgcaccggacgagctggccgaaagggttgtgccattacatttatttctgaggaagaggca
agatatgcacctgatctgctgaaagccttggaactatctgagcagattgttccgaatgat
ctgaaagctcttgctggtagctttatggcaaaagtgaatcaaggactggagcaagctcat
gggactggttatggaggcagtggctttaaatttaatgaagaggaagatgaggtgaggaaa
gcagcaaagaaagcacaagccaaggagtatgggtttgaagaagaaaagtcagattctgaa
gatgaagatgaaggtattaggaaggcaggaggtgatatctcacagcattctgcttttgcc
cagattattgctgccactaaagggaatgctcctgcattgcctactccaatactcctacca
tccttgcaagtcttgcctgggacagggctacctcttcctgcaaacgatggggcagctcga
gcagcagcaatagctgctctaaacttgcaggacaagttagataaaatacgatcagaagca
ttaccagagcattatgaggctgagttggaaataaatgatttcccccagaatgctcgctgg
aaggttacacacaaggaaactttgggccctatttctgaatggagtggagctgccattacc
actagggggcagtttttcccacctggcaaaatcccaggacctggggaacgcaaactctac
ttgttcattgaaggtcctactgagcactccgttaagtcagctaaagcagacttgaagcgt
gttttggaagacatcacaaatcaggctttgcaacttcctggtggaactcaaccgggcaaa
tactctgttgtgtaa
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