Geobacter sulfurreducens KN400: KN400_0036
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Entry
KN400_0036 CDS
T01940
Name
(GenBank) 2',5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
gsk
Geobacter sulfurreducens KN400
Brite
KEGG Orthology (KO) [BR:
gsk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gsk03016
]
KN400_0036
Enzymes [BR:
gsk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
KN400_0036
Transfer RNA biogenesis [BR:
gsk03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
KN400_0036
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HVSL
Motif
Other DBs
NCBI-ProteinID:
ADI82899
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All DBs
Position
complement(45718..46257)
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AA seq
179 aa
AA seq
DB search
MYRLFVAIDLPGSVRAQLADLGRELDGVRLVPPDQLHLTLRFIGNADDECFQRIKDSLAT
VTSPPFTLALAGVGCFPSPRRPRVIWAGITPNERLTLLQRAVEKAVAAAGIPPEERPFCP
HITLARLKEAIPKGFPAFQSRHGGLSAEPFTVEEFLLYSSTLTAGSALHRREASYRLTG
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtcttttcgttgccattgatctgcccggttccgtcagggcacagcttgccgat
ctcggccgggaactggacggggttcgcctagtgcccccggaccagctccacctgaccctt
cgctttatcggaaatgccgacgacgaatgctttcagcggatcaaagacagcctggctacc
gtaacgtcaccaccttttaccctggcgctggcaggggtcggctgctttccctccccacga
cgcccccgcgtaatctgggccgggattacccccaatgagcggctgaccctcctgcagcgc
gcggtggaaaaggccgttgcagcggcgggtattcccccggaagagcgcccgttttgcccg
cacataacgctggcgcgcctcaaggaggccataccgaagggtttccccgctttccagtcc
agacacgggggactcagtgcggagccgttcactgtcgaagaattcctcctctattcgagc
acgctaaccgcgggcagtgccctgcaccgtcgcgaggcgtcctatcgattgaccggctga
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