Geobacter sulfurreducens KN400: KN400_0899
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Entry
KN400_0899 CDS
T01940
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gsk
Geobacter sulfurreducens KN400
Pathway
gsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KN400_0899 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsk03019
]
KN400_0899 (rhlE-2)
Enzymes [BR:
gsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KN400_0899 (rhlE-2)
Messenger RNA biogenesis [BR:
gsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KN400_0899 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
AAA_22
Flavi_DEAD
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
ADI83762
LinkDB
All DBs
Position
956324..957664
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AA seq
446 aa
AA seq
DB search
MDFKSFGFHPAVSGGVAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL
HRLQQGERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAG
AEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPSRRQTLL
FSATMPIDIRALAQEILVDPVTVQVGNVAPAVTVAHALYPVEQHLKTPLLLELLRHTDTE
SVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTYQILVATDIAA
RGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRSIERSLGA
TIERRTVQGFDYSVPAPKKDVEFARPPREPRQARPHGSQPKKGGAAASPPSGRPSHPKEP
GQRQPGQGTSASGPARQRPGSPRRPR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaaatcgttcggttttcatccggccgtgtccggaggagttgcggccgccggc
tacgagaccccaacgccgatccaggcccaggccatccccgcggtcatggcgggacgcgac
gtcatggggctggcccagaccggtaccggcaagaccgcggcctttgccctgccgatcctg
caccggctgcagcagggagagcgcggccgtgtcagggccttggtcattgcccctacccgc
gagcttgcggagcagatcaacgacagcttcgtcaccctgggacggcagacccgcctgcgg
agcgtgacggtctacggcggggtaggcgtgaatccccaggtgcagaagctcaaggccggc
gccgaagtggtcgtggcctgtccgggccggctcctggaccacattgcccaggggaccatc
gacctgtcgcgcctggaggtgctcgtcctggacgaagcggaccagatgttcgacatgggc
tttctccccgacatccggcgggtgctcaagcatctcccttcccggcggcagacgctgctc
ttctcggccaccatgcccatcgacatccgtgcgctggcccaggaaatcctggtggacccg
gtgacggtacaggtggggaacgtggctccggcggtcaccgtcgcccacgccctctacccg
gtggaacagcacctgaagaccccgcttctgctggagcttctccgccacacggacaccgag
tcggtgctgatcttcacccgcaccaagcaccgggccaagcgcctgggcgaacaactggaa
aaggctggctaccgggcggcctcgctccaggggaacctctcccagaaccgtcgccaggca
gccctggacggcttccgggacggcacctaccaaattctggtggccaccgatatcgcggcc
cgcggcatcgacgtgagccaggtgtcccatgtgatcaactatgacatccccgacacggcc
gaggcgtacatccaccgtatcggccgcaccggccgcgcggcccgcagcggcgacgccttc
accctggtgacctctgacgacggggccatggtccggagcatcgagcggagcctcggcgcc
accatcgagcgtcgcaccgtccagggctttgactactcggtgccggcgccgaagaaggat
gtggagtttgcccgtccgccccgtgagccgcgccaggcccgcccccatggaagccagcca
aagaaagggggagcagcggcatccccgccttccggccgcccgtcccatcccaaggaaccg
ggccagcggcagccgggtcaggggacgtccgcttcgggcccggcgcgccagcggcccgga
agtccccgccggccccgctga
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