Geobacter sulfurreducens KN400: KN400_1512
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Entry
KN400_1512 CDS
T01940
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gsk
Geobacter sulfurreducens KN400
Pathway
gsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KN400_1512 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsk03019
]
KN400_1512 (rnr)
03016 Transfer RNA biogenesis [BR:
gsk03016
]
KN400_1512 (rnr)
Enzymes [BR:
gsk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KN400_1512 (rnr)
Messenger RNA biogenesis [BR:
gsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KN400_1512 (rnr)
Transfer RNA biogenesis [BR:
gsk03016
]
Prokaryotic type
tRNA degradation factors
KN400_1512 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
Hva1_TUDOR
Ribosomal_L27
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
ADI84324
LinkDB
All DBs
Position
1596420..1598711
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AA seq
763 aa
AA seq
DB search
MKRKREEVLAFIREQGGSTPFRDMMQAFGVTKANRLGFKQFVDQLVSAGDLVKQRGNRYA
VPSEETVVRGRLVTHREGYGFVVPEGGGDDVYVPARYLGGNLHGDVVEVRVESFKRGGKK
EGRIIRTIERGLKRIVGRFDTAGGVGFVQPDDTRITRDIAVPQKAWGGARSGQVVVAELT
AWPTERKKAEGRIVEVLGSPDDPEVEVLTIIRKHDLPYEFPVDVLTEARSTPQEVRRGDV
AKRVDLRERLTVTIDGETARDFDDAVSVQREKGGDIRLWVSIADVSHYVKPGSALDREAY
LRGTSVYFPDRCIPMLPEELSNGICSLNPQVERLTLTAEMLFTRSGAIKSSSFYPSVIRS
AARLTYTTVRKVLVDGDPEAIKANRHLVDDLEVMKELALRLMEKRKKRGSIDFDLPEPQI
VLDLQGEMVDIIRSERNLAHRIIEEFMLAANEAVASHIEERGIPSLYRVHEPPDPTKLTD
FREFIFNFGYAFRMDGDRVDPHELQRLIDEAEGKPEERMINEVLLRCMKQARYSHENLGH
FGLAARCYTHFTSPIRRYPDLVVHRILKDILAGAMTEKEQERLAAALPETAEQTSRRERL
AMEAEREIVALKKAQFMKERVGETFEGYITGVSSFGFFVELIDLFVEGMVHVSTLANDFY
RYEEKRHSLVGERTKETFRIGDRVSVLVAAVSIERRQVEFVLAGLHEVRPGSAERTSATE
EYPRIPVRGKRPKALQAPRGKGGGRGRGSGEKRTGGKGGRPKR
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggaaacgggaggaagtcctcgcgttcatccgcgagcaagggggcagcaccccc
ttcagggacatgatgcaggcctttggcgtaaccaaggccaatcggctgggattcaagcag
ttcgtggaccaactggtgtcggcgggcgatctggtgaaacagcgcggcaaccgctacgcc
gtcccgtcagaggaaaccgtcgtccgggggcgtcttgtcactcatcgcgagggatacggc
ttcgtggttcccgaggggggaggagacgacgtctacgtcccggcccgatacctgggggga
aacctccacggggatgtggttgaagtccgggttgaatcctttaagcgtggagggaagaag
gaagggcggattatccggaccatcgaacgggggctcaagcggatcgtcggccgattcgac
accgccggcggggtggggttcgtccagccggacgacacccgcatcacccgggatatcgcg
gttccccaaaaagcatgggggggggcccgcagcggtcaggtggtagtggcggagcttacg
gcctggcccacggagcggaagaaggcggaggggcgcatcgtggaagtgttgggctctccc
gacgaccccgaggttgaggtcctcaccattatccgcaagcatgaccttccctatgaattt
cccgtagacgtactgactgaggcccgttccactccgcaggaggtgcgcaggggggacgtg
gccaaacgggtggatctgcgggagcggcttaccgtcaccattgacggcgagacggcccgg
gatttcgatgacgcggtatccgtgcagcgggaaaaggggggcgacatccgcctctgggtc
tccatcgccgatgtgtcccactacgtgaaaccgggatctgccctggaccgtgaagcctac
ctgcggggaacctctgtctatttccccgatcgctgtatccccatgctgcccgaggaactt
tccaacggcatctgttcgctcaatccccaggtggagcgcctgacgctcacggccgagatg
ctgttcacccgaagcggggccattaagtcctcgtcgttctatccgagcgtgatcaggagc
gccgcacggctcacctatacgacggtccgcaaggtgctcgtagacggcgatccggaggca
atcaaggccaaccgtcacctggtagacgaccttgaagtaatgaaggagttggcgctgcgc
ctcatggagaagcggaaaaaacgcggcagcatcgacttcgacctgcccgagccgcagatc
gtcctggatctccagggggagatggtggatatcatccggtccgagcgcaaccttgcccac
cggatcattgaagagttcatgctggcggccaacgaggcggtggcgtcccatatcgaggag
cggggaataccctctctctatcgggttcacgaaccgcccgacccgaccaagctgaccgac
ttccgggagttcattttcaatttcggctatgccttccggatggatggcgaccgggtcgac
ccccacgaacttcagcggctcatcgacgaagccgagggaaagcccgaggagcggatgatc
aacgaggtgctcctgcggtgcatgaagcaggcccgctacagccacgaaaacttggggcat
ttcggcctggcggcccgttgctacacccatttcacctcccccatccgccgttatcccgac
ctggttgtgcaccgcattctcaaggacattctcgccggggccatgactgagaaggaacag
gagcgcctggccgccgccctgccggagacggccgagcagacgagtcgccgggagcgtctc
gcaatggaggctgaacgggagatcgtggcgctcaagaaggcccaatttatgaaggagcgg
gtcggcgaaacctttgagggctatatcaccggggtaagctccttcggctttttcgtggag
ctgatcgatctgtttgtcgaggggatggttcatgtctctaccctggccaatgacttttac
cgttacgaggagaaacggcactcgctggtgggagaacggacaaaggagaccttcaggatc
ggcgacagggtcagcgttctggtggctgcggtgagcattgagcggcggcaggtggagttc
gttctcgcgggtctccacgaagtccggccgggctcggcggaaaggacgtcggcgacggag
gagtatccgcggataccggtcaggggtaagcgacccaaggctcttcaggcaccccggggc
aaggggggagggcgcggccgtggttccggggagaagcgtacggggggcaaaggtggccgc
cccaaacggtga
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