Geobacter sulfurreducens KN400: KN400_1559
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Entry
KN400_1559 CDS
T01940
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gsk
Geobacter sulfurreducens KN400
Pathway
gsk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KN400_1559 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsk03400
]
KN400_1559 (recB)
Enzymes [BR:
gsk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KN400_1559 (recB)
DNA repair and recombination proteins [BR:
gsk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KN400_1559 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADI84371
LinkDB
All DBs
Position
1653088..1656702
Genome browser
AA seq
1204 aa
AA seq
DB search
MTSLRPHDNLTVELSGHNLVEASAGTGKTFAIACLYLRLVVEGEGLLPDNILVVTFTEAA
TKELRARIRQRLRQARDRFAGGGAPDEFLDRLALGERWPGHATALARIDSALQTFDCAAI
STIHGFCLRALQENAFESGSLFDTELAADQEPLLRQVADDFWRHHFFGADAPLLPLALGR
RWSPEELAAFLRNIAGKPHLAVEPVWHSGEADRVAGEIRDAFAALSSLWRTQRAEIAAIL
AADPGLSRSRSNYHPDLVPGLLVAMDGYAAGADPYALFAGFDKFTTGFLAGQRLKKADPP
RHDCFDLCDRLARLTSQRLLLLKAEFAARGRERLAALKAQRNVRGYDDLLTDLHAALGGP
GGAALADRPRGRYRAALIDEFQDTDQVQYRIFRAVFSGGAVPLFLIGDPKQAIYSFRGAD
VFAYLEARQEIPAERRFTMDRNWRSTPEMVEAVSSLFRLGGEHPFLAGDIAFPPVTAARR
QGCSFGDRDPAPLQLWFFRRGESDRDCINLGTGRQRIVTAVADEISGLLADGRAGTACLE
DEDGRMQPLTPGDVAVIVRSHFEAGLVQQALRERGIPSVVQSADSLFETREAGEVWTVMG
AVAEPGNEGRVRAALVTALFGLNGNDLALLMEQEAAWEARIAAFRDYRDLWREQGFMTMF
RALLDREGVRERCLPLPDGERRLTNLRHCAEVLHQAAVERRLGPDALTAWFGERVSVPPP
GEDYQIRLESDDRAVRIVTVHVSKGLEYPVVFAPFMWGGLRDDGDLTLCHEEGYRLVADF
GTDRRDERQRRARTEALAENLRLLYVALTRARCRAYLVWGKFRGAETSAPGWLLHGSRPD
GGGDPVALLEGTLKKATDQTLLERLDHLATASGGGIAVTEDPCPDRLPRFRPAMGEAPLV
CRDFRGDIDAGWRVASFTSFASGHREPAELPDRDQTPPELPPDAASDTAAPPEGSMFAFP
RGPRAGIFLHGLFEQLDFAVAGDDTVRDLVRRELERNGHGAQWLDPVSRMVGNVLNVPLG
GEGNSFRLADLAPGSWLAELEFYFPLRFVRDAQVATILAGAGVLPQGADLGAVARRIAFG
EARGMVRGFVDLVFRHSGRYYLIDWKSNHLGNRAEDYGPERLCREMERSLYPLQYLLYTV
ALNRFLERRLPGYRYEEHFGGVFYLFLRGIDPERPALGVYHDLPRPDLVRALTDCLAGRE
GGAP
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccctgcgaccccatgacaatctgaccgtggaactgtccggccacaacctggtg
gaagccagcgccggcacgggcaagacctttgccatagcctgcctctacctgcgcctggtg
gtggaaggggaggggctgctccccgataacatcctggtggtgacctttaccgaggcggcc
accaaggagctgcgcgcccgcatccgccagcggctgcgccaggcccgcgaccggttcgcc
ggtgggggcgcgccggacgagttcctcgaccggctggccctgggtgagcgctggccgggg
cacgccacagccctggcccggatagacagcgccctccagaccttcgactgcgccgccatc
tccaccatccacggcttctgcctccgggcgctccaggaaaacgccttcgagagcggttcc
ctgttcgacaccgaactggcggcggaccaggaaccgctcctgcgccaggtggcggacgat
ttctggcgccaccacttcttcggcgctgacgcgccgctgctccccctggccctgggccgg
cgctggtccccggaggaactggcggcattcctgcggaacattgccggcaagccccacctg
gccgtggagccggtctggcattccggtgaagcggaccgcgtggccggggagatccgggac
gcctttgccgcgctctcgtccctctggcggacgcaacgggcggagattgccgccatcctg
gccgccgatcccgggctgagccgctccaggagcaactaccacccggacctggtgccggga
cttctggtcgccatggacggctacgcggccggagcggacccctacgcgctctttgccggg
ttcgacaaattcaccaccgggttcctggccgggcagcggctcaaaaaggccgacccgccc
cggcacgactgcttcgatctctgcgaccgcctggcacggctcacctcccagcggctcctg
cttctgaaggccgagttcgcggcccggggccgggagcggctggccgcgctcaaggcgcag
cgcaacgtccggggatatgatgacctgctcacggacctccacgccgcccttggcgggccc
ggcggcgcggccctggccgaccggccgcgtgggcgctaccgggccgccctcatcgacgag
ttccaggacacggaccaggtccagtaccggatcttccgggcggtcttcagcggcggcgca
gtgcccctgtttctgatcggcgaccccaagcaggccatctacagcttccggggggccgac
gttttcgcctacctggaggcccggcaggagatcccggcggagcggcgcttcaccatggac
cgcaactggcgctccacgccggagatggtcgaagcggtgagttccctgttccgcctgggg
ggggagcaccccttcctggccggcgacatcgcctttcccccggtcacggcggcccggcgg
cagggatgttccttcggcgaccgcgatccggcaccgctccagctctggttcttccgccgg
ggcgagagcgaccgcgactgcatcaacctgggtacgggccggcagcggatcgtcaccgcc
gttgccgacgagatctccgggctcctggccgacggccgcgccggcacggcctgcctggag
gacgaggacgggcggatgcagcccctcacccccggcgacgtggccgtcatcgtccggtcc
cacttcgaggcgggcctggtccagcaggccctgcgggagcggggcatcccctccgtggtc
cagagtgccgacagcctgttcgagacccgcgaggccggcgaggtctggaccgtgatgggg
gccgtggccgagccggggaacgaggggcgggtcagggcggccctggtcacggcgctcttc
gggctcaacggcaacgacctggcgcttctcatggagcaggaggcggcctgggaagcgcgg
atcgccgccttccgcgactaccgcgacctctggcgcgagcagggcttcatgaccatgttc
cgcgccctcctggaccgggagggggtgagggagcggtgccttcccctgcccgacggggaa
cggcggctcaccaacctgcgccactgcgccgaggtgctccaccaggcggccgttgagcgg
cgtctcggccccgatgccctgacggcgtggttcggggagcgggtgagcgtgcccccgccc
ggggaggattaccagatccggctcgaatcggacgaccgggcggtccgcatcgtcacggtc
cacgtcagcaaggggctggagtatcccgtggtctttgcccccttcatgtggggcgggttg
cgggatgacggggacctgaccctctgtcacgaggagggctaccggctggtggcggatttc
ggcaccgaccgccgggacgagcggcagcgccgggcccgcaccgaggccctggccgagaat
ctccgcctcctctacgtggccctcaccagggcccgctgccgcgcctacctggtctggggt
aagttccgcggcgccgagacatcggctccgggctggctcctccacggcagccggcccgac
gggggaggcgacccggtggcgctcctggaagggaccctgaagaaggcgaccgaccagacc
ctgctggagcggctcgaccacctggcaacggcaagcggcggaggcattgccgtgaccgaa
gacccgtgcccggaccggctgccccgcttccggccggccatgggtgaggcgccgctggtc
tgccgggacttcaggggcgacatcgacgcgggctggcgggtggccagcttcacctccttt
gcctcggggcaccgggaacccgccgagttgccggaccgggaccagaccccgccggagctt
ccgcccgacgcggccagcgacacggcagccccgcccgagggctccatgttcgcctttccc
cgggggccccgggccggcatcttcctgcacggcctcttcgagcagctcgattttgccgtt
gccggcgacgatacggtgcgggacctggtccggcgcgaactggagcgcaacggccatggc
gcccagtggctcgatccggtgagccgcatggtcggcaacgtcctgaatgttcctctgggc
ggggaggggaattctttccgtctggccgacctggcccccggcagctggctggcggagctg
gagttctatttcccgctccggttcgtgcgggacgcccaagtggcaaccatcctggccggg
gccggggtgctcccccagggggccgacctgggggcggtggcgcgccggatcgccttcggc
gaggcccggggcatggtgcgcggcttcgttgacctggtgttccgccacagtggccgctac
tacctgatcgactggaaatcgaaccacctggggaaccgggccgaggattacggccccgag
cgcctctgccgggagatggagcgctccctctatccgctccagtacctgctctacaccgtg
gccctcaaccgcttcctggagcgccgtctgcccggctatcgctacgaggagcacttcggc
ggagtgttctacctgttcctgcgggggatcgatcccgaacgccccgccctgggggtctat
catgacctgccgcggcccgacctagtgcgggcattgaccgactgcctcgccgggcgggaa
ggaggagcgccgtga
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