Galdieria sulphuraria: Gasu_00680
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Entry
Gasu_00680 CDS
T02926
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
gsl
Galdieria sulphuraria
Pathway
gsl03013
Nucleocytoplasmic transport
gsl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Gasu_00680
09122 Translation
03013 Nucleocytoplasmic transport
Gasu_00680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsl03019
]
Gasu_00680
03041 Spliceosome [BR:
gsl03041
]
Gasu_00680
Messenger RNA biogenesis [BR:
gsl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
Gasu_00680
Spliceosome [BR:
gsl03041
]
Complex C
Other components
EJC/TREX
Gasu_00680
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Gasu_00680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
17091258
NCBI-ProteinID:
XP_005709221
UniProt:
M2W9W5
LinkDB
All DBs
Position
Unknown
AA seq
1437 aa
AA seq
DB search
MESLESNGLLSSSTQWTRRAIRTNTRLFYTQEKFNLLREETEGFAKLITDLLGSHRSRDS
TTKQHTRLVSLVGCFDLDPNRVVDLIWNASAYCNEKCGELLSLMSTFRSDYISQILGFKF
QNCQWNRKSLCTETEESVNFDSTFSPILAENSTVPYSELGPLIEVAAEALSRQLIRLCDI
WPHLSPEDSVIFTRLIEFANEVDKTTAEFGVVSLSGGESSLGSRVSRTEQPFKTYEDFEQ
GPFSEGLFSKIELICALLERGSWNIVVDCMKILSDSGQKNLSDFGQQLCSHPRYRTVLVA
IAEQVLEKFLGKTLNLSLSCPSSANNYFLKMKEEKLLMLFGFQGFEDLLHKEVKGAEQKH
HALVYILLSLGPYIKQSCRCLFLLCRFVQKQLNESDGVRNLGLRLLVEVIFPAMSCIKGN
PALSIELWRTMCLLRFDERYQIYYLVKHSIRQEYSLVRRSNSWTSFETRRVLRRLAKENV
KQFGRWLGKICNGNPLIAAECILEQVQSYENLIPVLIDALKYMTPLTFDIIMYSCLEQLD
TCNKDKIKSDGMNLSQWYYGLCIFISGLIRKYFAFVDCRGLFHFIFNKLEEGDSVYVFLL
LEILSRVSGGGNTEHLSDSQMSSLGGGPLLREIVASALSSSLPETKKVSRKAAEMIKNLV
NSEGLVADLAILVAQQKESILFDSVHREIPLRMICNIFDKCQETLILYTDLILGEDKCSH
IGGDSDDVESRSESHTNGKPDTLNFPSFQSLVVDYHIPYVSAFLFMRPYLVFENIFNMSP
DTSNLSREPFHISCLTKVFPDSMWESISPELFVAFWTLKLYDIHVPKDSYLMELQRLRSM
VYDDQVTENDIHSLVRNVKESRRHRQAGRKLEETLSLLEEEMRVHESHYQRIQSLLCERK
SFFFTQISNAKNWSIVFLQICLIPRCISSFSDAAFCSKFLEVLLDLDPPGLRILPLFHYL
LLNIGEISQCLTEAEATRFGNFVAEVLKILNEWWMNENKYNAECHKRLAFSLEVNEEQGS
GIKYSEFATWNREVHSVMTKSMLSNLDSDNYLDIRNSIEILSRVIKYFPRIESHGLLIQR
KLQEVIENKNETFRVVASRYLSLLQNERGNWISHAEVDPIDSVKLKGDLLDTNFLHSFRH
LYNSEVSTMFSQKSEPTQMTPEEMEEMHIDEQIEKQNTQITVEQDSSSAMPEQSVYDEEL
QVASTHLEDPKTMSILEVNEKMDSSHITDPTHAELARIQAAVAEKRQLLQREREKRNRLP
EQNAKEELSLKNATKETPEPGEITKGSSRSVYKKEPSSSRDSSDDLEARKRRRGLVEEEG
ANASDTNRRNKRERTDAVTSSRNDIMNASRAKDTLSSSRSYSPGSRTYSGAIGDSNRNRN
SRSSYVSQERVFREGESSNRVRRPSVSEQREKKAEDPDNREAYSSTRMSSRSRKSRK
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtctagagagcaatggacttctctcctcttccactcaatggactagaagagca
atacgcacgaatacaagattgttttatacacaggagaaatttaaccttttacgagaagaa
acggaaggatttgccaaacttattacagaccttttagggtcacatagatctcgggattcg
acaacaaaacaacatacacgccttgtttctttggtgggttgttttgatcttgatcccaat
agagtcgtagaccttatctggaacgctagcgcatactgtaacgaaaaatgtggagaattg
ttatcattaatgtccacatttcgctcagactatatttcgcagattcttggattcaaattt
caaaactgccagtggaacaggaaaagtctgtgtacagagacagaagagtctgttaacttt
gattcaacgttttctcctatattggcagaaaactctactgtaccttattcggagcttggt
cctctcatcgaagtcgcagcggaagctttgagccgtcagttgattcgtctctgtgatatc
tggccacacttatcacctgaagactctgtaattttcactagattgatagaatttgctaac
gaggttgacaaaaccactgcagagtttggtgttgtaagtttatctggaggagaaagcagc
ttaggttcccgagtcagtcgaacggaacagccttttaagacatatgaagactttgagcaa
ggcccattttccgaaggacttttctcgaagattgaactcatttgtgctctattagaacga
ggctcttggaacattgttgttgattgcatgaagatactgtcagattctggtcaaaaaaat
ttatcggactttggacaacaattgtgttcccatcctcgttatcgaactgtcctcgtagcg
attgctgagcaagtcttagaaaaattcctaggcaaaacgctaaacctaagcttgagttgt
ccatcttcagctaataactattttctaaaaatgaaagaagagaagttgttgatgttattc
ggatttcaaggtttcgaggacttgcttcacaaggaagtgaaaggcgcagaacagaaacat
catgcactagtttatatattgctttcacttggtccgtatatcaaacagagttgtcggtgt
ctgttccttttgtgtcgttttgtacaaaagcaacttaacgaaagtgatggagttagaaat
cttgggttaagactcctggtagaagttatatttcccgcaatgagctgtataaaggggaat
cctgcgctttctattgaattgtggagaacgatgtgtcttcttcgctttgatgaacgttac
caaatttattatttggtaaagcattctataagacaggagtacagtcttgtaagaagatcg
aattcctggacaagttttgagacgagaagggttttgcgacgtcttgcgaaagaaaatgtc
aaacaatttgggcgttggttagggaagatttgcaatggaaatccacttatcgctgcggaa
tgtatactggaacaagttcaaagctatgaaaacttgattcccgtcttaattgatgcattg
aagtatatgacaccgttgacttttgatattatcatgtatagctgtcttgagcagttagat
acttgtaacaaggacaaaatcaagtctgacggaatgaatctctctcagtggtattatggt
ctttgtatttttatttctggtcttataagaaagtactttgcattcgttgattgccgaggt
ctatttcattttatctttaataaattggaggaaggagattctgtgtatgtgtttctcctt
ttggaaatcctgagtagagtgagcggaggtggaaatacggagcatttgagtgattcccaa
atgtcttcgttaggcggaggtcctttattacgtgaaattgtagcgtctgctttgtcttcc
tctttgccagagacgaagaaagtatcacgcaaagctgcagagatgataaaaaatttagtc
aattcagaaggacttgttgccgatttggctattttggtagctcaacagaaagaatctata
ttattcgattcagtccatcgagaaattcctctgagaatgatttgcaatatctttgataag
tgtcaagaaactctaatcctttatacggacctgattttgggagaagacaagtgttctcac
ataggtggtgatagtgacgatgtcgaaagtcgctctgaatcccacacaaacggaaagcca
gatacgttgaattttccatcctttcagtctcttgtagtggattaccatataccttatgtt
tctgcgtttctttttatgcgtccgtatcttgtatttgaaaacatctttaatatgtcacca
gatacttctaatttatcaagggaaccgttccatatcagctgcctaacaaaagtatttcca
gacagtatgtgggagtcgataagtcccgaactctttgttgcattttggacacttaaactt
tatgacattcatgttccaaaagattcctatttgatggagttacaaagactacgttctatg
gtgtatgatgatcaagttactgagaatgacatacactccttggttcgtaatgtcaaggaa
agtcgaagacatcgacaagctggcagaaagttagaagagactctttcccttttggaggaa
gaaatgcgggttcatgagagccactatcagcggatacaaagtttgttatgtgaaaggaaa
tccttttttttcacacaaatctcaaatgcaaaaaactggtctatcgtctttttacaaatt
tgtttgatacctcgctgcatctcaagcttcagtgatgcagctttttgctcaaagtttctt
gaggttcttttggatttagatcctcctggtctacggattcttccactttttcattatctg
ctattaaatattggtgagatatcacaatgtttaaccgaggctgaagccacgaggtttggc
aattttgtcgcggaagttttgaaaatactgaatgaatggtggatgaatgaaaacaagtat
aatgcagagtgccataaacggttagcattttccttagaggtaaatgaagaacagggtagt
ggtattaagtattcggagtttgcaacttggaatcgggaggtccattcagttatgaccaag
agcatgttgtccaatttagacagcgacaactatttggacattcgcaattctattgaaatc
ctatctcgtgtgataaaatactttccccggatagaaagtcatggacttctgattcagaga
aagcttcaagaagttattgagaataagaatgaaacttttagggttgtagcctcccgatat
ttgtccttgctacagaatgaacgagggaattggatatcacatgccgaagtagatcctatc
gactccgtgaaattgaagggcgacttgttagataccaatttcctacatagttttcgacat
ttgtacaattctgaagtctcaacaatgttttcgcaaaagtcagagccaactcaaatgact
ccagaagagatggaagaaatgcacatagatgaacaaattgagaaacagaacactcagatt
actgttgagcaagactcctcttccgctatgcctgagcaatctgtgtatgatgaagaattg
caggttgcttctacgcatcttgaagatccgaagacaatgagtattcttgaagtgaacgaa
aaaatggattcatctcatataacggatccaacccatgctgaattagcacgtatccaggca
gcagttgcagagaaacgacagcttttgcaaagagaacgagaaaagagaaaccgtttacca
gaacaaaatgcgaaggaagaactgtctttgaagaacgctacaaaagaaactcctgaacct
ggtgaaataacaaagggcagtagtcgttcagtttacaagaaagaaccatcttcaagtaga
gacagtagtgacgacctggaagctcgcaaaagaagacgtggccttgtcgaggaggaagga
gctaatgcctcagatacaaatagacgtaacaaaagagaacgaacagatgcagttacgtct
tctagaaacgatattatgaatgcctctcgtgcaaaagataccttgagctccagccgttct
tattctccaggttcccgtacctattccggtgctattggagattccaaccggaacagaaat
tcaagatcttcatacgttagccaagaacgcgtgtttcgagagggtgagagttcaaacaga
gttcgtcgtccatctgtttcggaacaacgagaaaagaaagctgaggatcctgacaataga
gaagcatacagttccacccgtatgagtagtcgctcacgcaagagtagaaaataa
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integrated database retrieval system