Galdieria sulphuraria: Gasu_02020
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Entry
Gasu_02020 CDS
T02926
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit 2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
gsl
Galdieria sulphuraria
Pathway
gsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gasu_02020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsl03019
]
Gasu_02020
Enzymes [BR:
gsl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
Gasu_02020
Messenger RNA biogenesis [BR:
gsl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Gasu_02020
mRNA degradation factors
3'-5' decay
Pan complex
Gasu_02020
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
RNase_T
UCH
PAN2_N
Motif
Other DBs
NCBI-GeneID:
17091392
NCBI-ProteinID:
XP_005709371
UniProt:
M2WAE4
LinkDB
All DBs
Position
Unknown
AA seq
1206 aa
AA seq
DB search
MELVSGPLLDQFPFVAGHSRQTLFDPEVELLWLVHGLKWFQELTLSTHFRSSTVGGQLAS
YRCADLSRYSSIQVCYPDGSASSQLGLVRDFTISSHLIFAATYKGLRTYSKGCLLKDDGH
KHPSLQSSMRCVVLNPFHQVQVFCANDTGQGMLVDSERFRIIRQENMSSIPDSCITTCSW
NTQALVTGDSKGKLSIREPASFRELLATCAFLGPIFDISTSDYQIAVAGMSSLTSPQAIE
TNVKLFDIRKLYPLQTIFAGGVPLELKLDIYGTTLGYSENKLLWILNSLGVLECFNISDD
PVTLIHSIVYDETMNTFITSFDVSKMGPIALADSTGMFHIWSYTEQNIEEDNCSFRIHSI
PIYPKEPVLSTSFGSQKMDITNIETAMLRSSFAFGQQDILCDEPERDWLASLLGHHCNEH
LDSSVRRNTYRRVDPKVLTQIHKMGKFSFVPVPSSFEQNDSYGWIEYIPSSNAGMIKNQE
REEFQDSPAYRCVYTQIDLLALQSFEGFDYTLYNKSPFCGLENGLPNSYVNSVIQSLFFL
DEFREYVIPLHRIQVEEEYCLMDELSLLFQMMKVGSGEACEASNFMRAFQRIPNTTALGL
LDGPTAHPIGLRIESFIRYMLEQLSRDEESFQLSSLEENDQNAVYWKKDSSRNGRTFSIV
EYLFGNQVVETFQFMKSFSHSERTHFLWSFHYQTWSKESKTVTASNMETYEELLKDFPKR
LEASFCEETRNIRAYNEVSGTFESCTRCKYLMEPSDVLLIGCSFADEEHYLHYWFRYSGE
LESNKERWSDEGARARAAKIALNYGQDIPHHLFFQRALSNQDNAHLHGWKVNGSSCPELA
QKNFERIYDLHFVIAFVPKKPIYNGAHNSKAWSDFPPVGHLVLYVRETMERTTREHCSHD
SFWWCINDFCITRCQSISEVTRFHPNWKLPVVLGYKVRKSFRYIPKVEISYSLADIYQRA
CSVIINPMSDSLLCSNSVASHLFPPKGSYIALDAEFVETSREVAEIHGDGSYKILKPAQM
SLGRVSVVFSTMNSSDSNFVVLMDDYLVQREHVVDYLTKYSGLTFEDLNPNTSKRPLTTL
KAVYMKLRCLIDNGCILIGHGLKKDFRIINFIVPKSQVIDTVELYRLPRQRLLSLRFLAA
TLLHEDIQGVTHDSVEDAQTAWRLFFYYQKLQEKGLVPQLLEDLYKYGREHHWQYSLEHP
FVSPIL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggagttggtctcaggacctctactggaccagtttccttttgttgctggtcacagtaga
caaactttattcgaccctgaggttgaactcttgtggttagtgcatggtctcaagtggttc
caagagctaactttatctacacatttcaggtcatctacagttggtggtcaattagcctct
tatcgttgtgcagatctctctagatattcctctatccaagtttgttatccagatggttct
gcttcgtcccagttgggccttgtacgagactttaccataagctcccatctgatatttgct
gctacttataaaggcttgcgtacctattctaaaggttgccttttgaaggatgatggtcat
aagcatccttcgcttcagtcgtctatgcgttgtgttgtactgaatccttttcatcaagtt
caagtgttttgtgccaatgatactggacagggaatgcttgtcgattccgaacgttttcga
atcattcgtcaagagaatatgagttctattccggattcgtgtattactacttgttcttgg
aatactcaggcattggttacaggagattcgaaaggaaagctgagtattagagaaccagct
tcctttcgagagttgttggcaacttgtgcatttctaggacctatttttgatataagtacc
agtgactaccaaattgcagttgctggaatgtcttcgttgacaagtcctcaagcgatagag
accaacgtcaaactattcgatattagaaaattgtatccacttcaaactatctttgctgga
ggcgttccactcgaacttaaattggatatatatggcactacacttggatattcggagaac
aaactactttggatactgaatagtcttggagtcttagaatgctttaatatatctgatgac
cctgttactttgattcatagtatagtatatgacgaaacaatgaatacctttattacgagt
tttgatgtctcaaaaatgggtcccattgctttggcagactctacaggaatgtttcatatt
tggtcctatacagaacaaaatattgaagaggataactgttcctttcgtattcattccatt
ccaatttatccaaaggaacccgttttgtctacttcattcggttctcagaaaatggacatt
acaaatatcgaaactgctatgttaaggtcatcttttgcgtttggacaacaagatatcctt
tgtgatgagccagagagggattggttagcttctttacttggtcatcattgtaatgaacat
ttggatagttctgttcgaaggaacacatatcgtagagttgatcctaaagtgttgacacaa
atacacaaaatgggcaaattctcctttgttccagttccttcttcttttgaacaaaatgac
tcatatggatggattgaatatattccgagttcgaatgcgggtatgataaaaaaccaagag
agagaagaatttcaagatagtccagcataccgttgtgtatatacccagattgacttatta
gctcttcaatcatttgaaggattcgactatactttatataataagagccctttttgtgga
ttagagaatggtcttcccaactcttatgtgaattctgtgattcaatccttgttctttttg
gatgaattccgcgaatatgtgatacctttacacagaatccaagttgaagaagagtattgc
ttgatggatgaactttcacttctattccaaatgatgaaagttggttccggagaagcgtgt
gaagcatccaactttatgagagcttttcaaagaattccaaacactactgcattaggtttg
ttggacggaccaacagctcatcccattggattaagaatagaaagttttattagatacatg
ttggaacaactatctcgagatgaggaatcctttcagttgagtagtttggaagagaacgat
caaaatgctgtctactggaagaaggactcttcaagaaatggtcgtacattttctattgta
gagtacttatttggaaatcaggtagtggagacctttcaatttatgaaatccttttcgcat
tctgagagaacacattttttatggtctttccattatcaaacttggagtaaggaatccaag
actgtgactgcttccaacatggaaacctatgaggagttgcttaaagattttccaaagcgt
ttggaagcttccttctgtgaagaaacccgaaacatacgtgcctataatgaagtctctgga
acttttgaatcttgtacgcgttgtaagtatttgatggagccaagtgacgttcttcttatt
ggctgcagttttgcggacgaagaacattatttgcattattggtttcgttattctggagaa
ttagaaagcaataaagaaagatggagtgatgaaggtgctcgagctcgagcggcaaagata
gctttgaattatggtcaagatattccacatcacttattttttcaacgagctttgtcaaac
caagataatgcgcatttacatggttggaaagtgaatggttcgagttgtcctgaattggct
caaaagaactttgaaaggatatacgatttgcatttcgttatcgcatttgttcctaagaaa
ccaatttacaatggagctcataatagtaaagcttggagtgattttcctccagttggtcac
ttggttctttatgttcgagaaaccatggaacgaacaactcgtgaacattgcagtcatgat
tcattttggtggtgtattaatgatttttgtataactcgttgtcaatccatatcagaagtg
actcgttttcatccaaattggaaattacccgttgttttgggatataaagttcgaaaatcg
ttccgatatatacccaaagtggagatctcttattctttagctgatatttatcaaagagca
tgttcagttatcattaatcctatgtcggatagcttactttgttcgaattcagttgccagt
cacttgtttcctccaaaaggttcttatattgcgttggatgctgaatttgtagagacttca
agagaagttgcagaaattcatggagatggtagttacaagatattgaagcctgcacaaatg
agcttaggaagagtctctgtagtattttccacgatgaatagcagtgattccaactttgtc
gtgttgatggatgattaccttgttcaacgagaacatgttgttgactatcttaccaagtat
tctggcctaactttcgaagatttgaatcctaacacgtctaaacgtcctttgaccacatta
aaagcagtatatatgaaattgagatgtctaattgataacggatgcatcttgattggacat
ggattgaaaaaagactttcgtataatcaactttatagttccgaaatcccaagtcattgat
actgtcgaactttatcgcttaccacgtcaaagattattgagtttgcgttttctagcggcc
actttgcttcatgaagatattcagggagttactcacgattctgtcgaagatgctcaaact
gcctggagactattcttctattatcagaaattacaagaaaaaggacttgttccacagtta
ttggaggacttgtataaatatggaagagagcatcattggcaatattcattggaacatcct
tttgtctctcctattctttaa
DBGET
integrated database retrieval system
