KEGG   Galdieria sulphuraria: Gasu_04240
Entry
Gasu_04240        CDS       T02926                                 
Name
(RefSeq) ATP-dependent RNA helicase
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
gsl  Galdieria sulphuraria
Pathway
gsl03013  Nucleocytoplasmic transport
gsl03015  mRNA surveillance pathway
gsl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gsl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Gasu_04240
  09122 Translation
   03013 Nucleocytoplasmic transport
    Gasu_04240
   03015 mRNA surveillance pathway
    Gasu_04240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gsl03019]
    Gasu_04240
   03041 Spliceosome [BR:gsl03041]
    Gasu_04240
Enzymes [BR:gsl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Gasu_04240
Messenger RNA biogenesis [BR:gsl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     Gasu_04240
Spliceosome [BR:gsl03041]
 Complex C
  Other components
   EJC/TREX
    Gasu_04240
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    Gasu_04240
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2 AAA_22
Other DBs
NCBI-GeneID: 17090920
NCBI-ProteinID: XP_005708850
UniProt: M2X757
LinkDB
Position
Unknown
AA seq 442 aa
MENGKKNENLVGDEDLVDYEEEDETSVPSGAVKSASTKESKKGSYVGIHSTGFKDFLLKP
ELLRAIQDCGFEHPSEVQEQCIPQAILGGDIVCQAKSGMGKTAVFALAVLHQLVPEDGKV
SCVVLGHTRELAYQIAHEFERFSKYLPNVRTAVLYGGVPIKQHIDRLKQSPPHIVVGTPG
RVLDLSRRKALDISSVQFFVLDECDKMLEQLDMRRDVQEIFRMTPHNKQVMMFSATLSKE
IRNVCKKFLSNPMEVYVDDEAKLTLHGLLQYYLKLEEQEKNRKLMDLLDTLEFNQVVIFV
KSVQRANALNKLLVEYNFPSIAIHSSMAQSERISRYQMFKDFQKRLLVATDIFARGIDIE
RVNIVINYDMPDLKGPEATAKTGADAYLHRVGRAGRFGTKGLAISFISSKEDNDVLNEVQ
SRFEVSIEPLPDKIDVASYMNA
NT seq 1329 nt   +upstreamnt  +downstreamnt
atggaaaacggtaaaaagaatgaaaaccttgttggtgacgaggaccttgtagattacgaa
gaagaggacgaaacctccgtgccaagtggtgcagtaaagagtgcttccacaaaggaatcc
aaaaagggaagttacgttgggattcacagtacaggttttaaggatttcctattgaaacca
gagcttttgcgagccattcaggattgtggtttcgaacacccttcagaagttcaagaacag
tgtatcccacaagctatccttggcggcgacattgtttgtcaggcaaaaagcggtatgggg
aagacagctgtctttgctttagctgtacttcaccaactggtacccgaagatggcaaagtt
agctgtgttgttttaggtcatactagagaacttgcctaccaaattgcacacgagtttgaa
cgattctcgaagtatcttcctaatgtgagaactgctgttctttatggtggtgttccaatc
aaacaacatatagatagacttaaacagtctccacctcatatcgttgttggaacacctgga
agagtattagacctttcacgtagaaaagctttggatatttcatcagttcaattttttgtt
cttgatgaatgtgataagatgttggaacaactcgatatgcgacgcgatgttcaagagatt
tttcgtatgactccgcataacaagcaggtgatgatgttttcggcaacgctttccaaggaa
attcgaaatgtttgtaaaaaatttctgtcaaatccaatggaagtttatgtggatgatgag
gccaagcttacccttcatggtttgttgcagtattatttgaaactcgaagaacaagagaag
aataggaagttgatggatcttctagacacattagagtttaaccaagtagttatctttgtg
aagtctgtgcagcgagctaatgctctcaataagctattggtagaatacaattttccttcc
attgctattcatagtagtatggcacagtcggagcgtatctctcgatatcagatgtttaaa
gatttccagaaacgtttactggtggctacggatatttttgcacgaggaatcgatatcgag
agagtaaacattgtgattaactacgatatgccggatttgaaaggcccagaagctacagcg
aagaccggagctgatgcttaccttcaccgagttggtcgcgcgggtcgttttgggactaaa
ggattagcaatatcttttattagttctaaggaagataacgacgtgttgaacgaggtacaa
agccgatttgaagtctccattgagcctcttcctgacaagatcgacgttgcatcatatatg
aatgcataa

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