Galdieria sulphuraria: Gasu_04940
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Entry
Gasu_04940 CDS
T02926
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gsl
Galdieria sulphuraria
Pathway
gsl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Gasu_04940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsl03021
]
Gasu_04940
03019 Messenger RNA biogenesis [BR:
gsl03019
]
Gasu_04940
Transcription machinery [BR:
gsl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Gasu_04940
Messenger RNA biogenesis [BR:
gsl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Gasu_04940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
VHS
zf_PCFS4
Pcf11_C
DUF4199
Motif
Other DBs
NCBI-GeneID:
17090991
NCBI-ProteinID:
XP_005708927
UniProt:
M2XQA7
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MDSPSAYLDASKEYSEFLLDLTFNSKPIIDNLTAIAAENKHAASAIVKAIESRIAAVSPD
KKLPALYLLDSIVKNVGEPYRSLFEKNLQTTFLSAFRTVPKAVRQSMMRLLETWPPYFGN
NLISLLKVRANEVQKQIQENTKGYEAVHVNPQVLLRTTAGNSHVDTKPQNYNVSYLERAQ
EKVPVPKPKENRIPAFLRLQQHGILNNNSEPTRKSSSKQASGVHSRLDTSSELMKQLQVE
TQLLVDTINAQLVRGMMPTQEQLNALQALVTVILQYANFNIIAQNFVPYLQQHTDNIVNQ
IKTLQENQQAQEQEAVIANAIQSLMSGYNSQLVPQNSESSLLVSERKIFPNNSKFESDVS
SSCQVQDEIITDFNILRRLDHGFIVCKLYDDLQIVSESDGSRFATREDLRQHLDWLFEWN
KRLRARRQGGICRMWYSSVHEWIQGTTSVRNSGMISSSMIFEDGTSQINIDKREQQLKKV
DEEANQTHRHENKVFAGDCEDRCFVCGDCFEMEWDDELEALVYKDAIKEGGDEGTKIFHV
DCYSVWKSQGGSHDWKSEDRDKNANEVEDSTLENFEHKESFSGSDLGFEIKAEPTKLDAS
EDFPDGTSDFPQKRLRTKEVL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggactctcccagtgcttatttggacgcttctaaagagtacagtgagtttcttttagac
ctcactttcaactccaagcctatcatcgacaaccttactgctatagctgcagaaaataaa
cacgctgcatcagcgattgtgaaagctatagagtcacgaattgcggccgtgtctccagat
aaaaagttgccagcactatatcttctagattcaatagttaaaaatgttggggaaccttac
agaagcctcttcgagaagaatcttcagacgacgtttctttcggctttcagaaccgtgcca
aaagcagtgagacaaagcatgatgagacttttggaaacctggccaccctattttggaaac
aacttgatctcattattgaaggtccgagcaaatgaagttcaaaaacaaatacaggagaat
acgaaaggatacgaagctgtacacgtcaatccccaggttttgcttaggaccacagcagga
aatagtcatgtcgataccaaaccacaaaactataatgtttcttatttagaacgagcccag
gaaaaggttccagtgcccaagcccaaagaaaatagaattcctgcctttttgcgtctacag
caacatggaatattgaataacaatagcgaaccaactagaaagtcgagcagcaagcaagct
agtggtgtccattcacgcttggacacatcatcggagttgatgaagcagcttcaagtggaa
actcaactgttagtagataccatcaatgcccaactagtccgtggaatgatgccaacacaa
gagcaattaaatgcattgcaagctcttgtaaccgtgattctccaatatgcaaattttaac
attattgcacaaaactttgtaccatatctgcaacagcacaccgacaatatagtcaatcag
ataaaaactctgcaagaaaatcaacaagcccaagaacaagaagctgtaattgcgaacgca
atccagtcccttatgtcaggctacaacagccagctcgttccgcagaattcggaatcttct
ctactagtttcagagagaaaaatttttccaaataattcgaaattcgagagcgatgtcagt
agtagttgtcaagtgcaagacgaaatcataacagatttcaatattttaagaagacttgat
catggttttatcgtttgtaagctttacgatgacttacaaatagtgagtgagtctgatggt
tccagattcgcaaccagagaggacttgcgtcaacacctagattggttatttgagtggaac
aaaagattaagagctcggagacaaggagggatatgtcgaatgtggtattcgagtgttcat
gaatggatacaaggaaccacttctgtaaggaattcaggaatgatctcatcttcaatgatt
tttgaggatggcacttctcaaataaacatagataaacgagagcaacaattgaagaaggta
gatgaggaagcaaatcaaacacaccgacatgagaacaaagtatttgcaggagattgtgaa
gacagatgttttgtttgtggagactgtttcgaaatggaatgggatgacgagctggaagct
cttgtatataaggatgctatcaaagaaggaggtgatgaagggacaaaaatatttcatgtt
gattgttattcagtttggaagtctcaaggaggcagccatgattggaaaagtgaagatcgt
gacaagaatgccaacgaggttgaagattctactctggagaattttgaacataaggaaagt
ttttcaggtagtgatttgggttttgaaatcaaagcagaaccaacgaagcttgatgcatcc
gaagatttccctgatggaaccagtgatttccctcagaaaaggcttcgcacaaaggaagtc
ttgtga
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