KEGG   Galdieria sulphuraria: Gasu_11920
Entry
Gasu_11920        CDS       T02926                                 
Name
(RefSeq) PRP4 pre-mRNA processing factor 4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
gsl  Galdieria sulphuraria
Pathway
gsl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gsl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Gasu_11920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gsl03041]
    Gasu_11920
Spliceosome [BR:gsl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    Gasu_11920
SSDB
Motif
Pfam: Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_WDHD1_1st WDR55 Beta-prop_WDR3_2nd WD40_Gbeta EIF3I WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_DCAF4 NBCH_WD40 Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_SCAP PRP4 WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_IFT140_1st eIF2A WD_LRWD1 Beta-prop_Nup120_160 Nucleoporin_N Tricorn_2nd WD40_like Beta-prop_ACSF4 Beta-prop_pof12
Other DBs
NCBI-GeneID: 17090156
NCBI-ProteinID: XP_005708036
UniProt: M2W6T9
LinkDB
Position
Unknown
AA seq 520 aa
MNEFGSTTKRMEDEYEDGSEIGYIDRAAESTLEQHRKVLEEFERKREARGILLPTDDVQV
RKELRKRQVPVTLFGEDAYDRRERLRLILALELEKAEKESDETQVIPEGPKLGDDKQTET
FYTEGTARLRAARKEICLHSLKCARERVSQEKRRVRALKAFSEQRNDMDDEDFSLAHSWQ
EKRKEFIKSAQFMSVLSSQFGDERPLTGIRFAPTHQILATCSWSGVIRLWNVSDCNEVGV
LRGHSERVSSIAFSPHVSSSYLLASASADNNVRLWSIDCDNYSLTKTTVLRGHSARVTSV
EYHPLGKYLATASFDHTWRLWDVETRKELLVQEGHSKPLYKVSFQVDGSLAISAGADCGA
RLWDLRTGRSIASFLGHGKPILTVDCSPDGYHFATGSEDHSIRIWDIRKKRCVYTIPAHS
ALVSHVEFHKNGHFLLSSSFDNSCKLWSTQGWVLIKALIDHEDKVMCCNSTSDGQYIASC
CFDRTWKLWGVENWAQEKEEGEEAPLLLNGMEDERMEISH
NT seq 1563 nt   +upstreamnt  +downstreamnt
atgaatgaatttggttcaacgactaagagaatggaagatgaatatgaggacggttcagaa
ataggttatatagatagggcagcagagtccactttagaacagcatagaaaagtgttggaa
gaatttgaaagaaaacgagaagctcgtggtattctgttaccgactgatgacgtccaagtt
aggaaagaacttcgaaagcgacaagtaccagtaacactatttggagaggacgcttatgat
agaagagaacgactaaggcttatattagcccttgaattggaaaaagcagagaaagagtcc
gacgaaacgcaagtgattccggaaggtcccaagttgggagatgataaacagacagaaaca
ttttatacagaaggaacggctcgattaagggcagcgagaaaggaaatctgtttgcattcc
ttgaaatgtgctcgagaaagggtatcgcaagaaaagagaagagtccgtgctctgaaagcc
ttttcagaacaaaggaatgatatggacgacgaagacttttctttggcccattcttggcaa
gagaagcgaaaagagtttataaagtccgcacaatttatgagcgttctttctagtcagttt
ggagacgaacgtcctcttacaggtattcgatttgcaccaacccatcaaatattagcaact
tgttcttggagcggtgtcattcggttatggaacgtttctgattgcaatgaagtaggagtt
ttacgaggacattcggaacgtgtatcttcgatagctttttcaccccatgtttcttcttcc
tatcttttggcaagtgcttctgcagataacaacgttcgtctttggtccattgactgtgat
aactactctctgactaaaacaactgttcttcgtggacattctgcaagagtgactagtgtt
gagtatcatccactcggcaaatatttagcgacagcctcgtttgatcatacttggagactg
tgggatgtggaaactaggaaagaacttttagtccaagaaggtcattctaaacctctatac
aaagtatcatttcaagtggatggttctcttgctatatctgcaggtgctgactgtggtgcc
cgattgtgggatcttcgtacgggaagaagtattgcatcttttctaggtcatggtaagccc
attttaacggtcgattgctctccagatggatatcattttgcaacgggtagtgaagaccac
tctattcgaatatgggatattaggaagaagcgatgtgtgtatacaatacctgcacattct
gcgttagtatcacatgtagaattccataaaaatggtcactttttgttatccagttcattc
gataacagttgcaagttatggagtacacagggatgggtattgataaaggcattaatagat
cacgaagataaggtgatgtgctgcaattctacaagcgatggtcaatatattgcaagctgt
tgttttgaccgtacttggaagctctggggtgtcgagaattgggcacaagagaaggaagaa
ggagaggaagctcccttgttgctcaacgggatggaggatgagagaatggagatatctcat
tga

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