Galdieria sulphuraria: Gasu_13450
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Entry
Gasu_13450 CDS
T02926
Name
(RefSeq) transcription initiation factor TFIIH subunit H4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
gsl
Galdieria sulphuraria
Pathway
gsl03022
Basal transcription factors
gsl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Gasu_13450
09124 Replication and repair
03420 Nucleotide excision repair
Gasu_13450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsl03021
]
Gasu_13450
03400 DNA repair and recombination proteins [BR:
gsl03400
]
Gasu_13450
Transcription machinery [BR:
gsl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Gasu_13450
DNA repair and recombination proteins [BR:
gsl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Gasu_13450
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Coatomer_E
TPR_19
TPR_14
TPR_2
TPR_16
Tfb2_C
ANAPC3
TPR_7
TPR_6
TPR_12
T7SS_EccA1_N
TPR_21
Helicase_C_3
TPR_10
DUF2007
Type_III_YscG
UPF0270
Motif
Other DBs
NCBI-GeneID:
17090029
NCBI-ProteinID:
XP_005707901
UniProt:
M2W6K2
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MKATNRGSLLEYLMDSEWADEVETLYKSPYATSCIFEILSSLQKAILTRLLFIQEIDAST
LLKWFQKQSQSQIQTIVNHLVDLRILYRKQGSNSVQFQMNPKFQKSLQDLILRNVVSPFV
RKEETDIGDHNTTSQQQLSYDVTFLSQYSRHCWNKILQFLVGLEPLESEPSVRIIEALVE
SGLIEQVEDGFRITTVGFQFLLKDTREQVWFILENILFSNETNLKIGTKLQKRVMNEEMV
EFLFELSFCASGVAYHWKTLSKTQQIYIPYLADLGLIYLHISSSLEKDSYFYVTPLGVTL
TRSICWLGDKNNYLLLEDWSNVDNDCRMIVQTNFRVYVYTNCTFQISLLSLFIQFLYRLP
NMAVGVITRDSIRTALNNGITAQQMISYLQNHMHPNMKGKLPITIIDQIRLWEAQRFRVT
TKHALLLDHFDNMTCFEKTYGTTRIGKFYSISSTEMIGEKIDDLFETRTFFYLHNFERAK
EEALQVQPGPELAQEKQALLARIEIAQGNYDEAIQSLEEDNKDDSKVLKWYAIYLKDASE
RPNILEQVNDLIESNLSGGNQIVTANILVHEGRYEQALELLQRQPTLETAALEVEILLRM
NRLDLAKILTERLNQLEGDAVLTHLTTAWVYLAEGSYREAEYIFAELSERHGSSDMLLNG
LATAYIGEGKYQEADNILQELVAKNPNYPPALVNCLVTSCHLSKTKEQMDAYRRQLKRVS
PDCKWLKELESFEERLSLLA
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcaaccaacagaggaagcttattagaatatcttatggactctgagtgggctgat
gaagtagagacactttataaaagtccttatgctacgagttgtatatttgaaatactttcc
tcgttgcaaaaggccattttaacacgcttattatttatacaagaaattgacgccagtact
ctattgaagtggttccaaaaacagtcacagtcacaaattcaaactattgtgaatcacttg
gtagacttaagaatactttatagaaagcaaggctccaactctgttcagtttcagatgaat
cccaagtttcaaaagagtttacaagatttgatattacgtaacgtagtttctccctttgtt
aggaaagaagaaacagatattggggatcataatactacaagtcagcagcaattgtcatat
gatgtgacttttctgagtcagtattcacgacactgttggaacaaaatactgcagtttctt
gtgggtttggaacccttggaaagtgaaccttccgtgagaatcatagaagccttagtggaa
agtggtttgatagaacaagttgaagatggttttcgaataactacggtcggatttcagttt
ctattaaaggatacaagggagcaagtctggtttattcttgagaatattttattctccaat
gaaacgaatctaaagataggaacaaagttacaaaaaagagttatgaacgaagaaatggtt
gagtttctatttgaattgagtttctgtgcttcaggagttgcttatcattggaaaacgtta
tctaaaacgcaacaaatttatattccttatttggctgatttagggttgatctatttacat
atttcatcgtcattagagaaagactcttacttttatgtcactccacttggagttacattg
actcgttcgatatgttggttgggagacaaaaacaactaccttttattggaagactggtca
aatgtggacaacgactgtcgaatgattgtgcagaccaattttcgtgtttatgtatatacc
aattgtacttttcagatttcgttgctttccttattcattcaattcctataccgcttaccc
aatatggcagttggtgttattaccagagatagcattcgaacagcacttaataatggaata
actgcacaacaaatgatatcttatttacagaatcatatgcatccgaatatgaaaggaaaa
cttcctataaccattatagatcagatacggttatgggaagctcaacgctttcgagttacg
accaaacatgctttactattggaccactttgataatatgacatgctttgagaaaacttac
ggcacaacaagaattggaaagttttattcaatctcttcaacggaaatgataggagaaaag
atagacgacttatttgagacgcgcacgtttttctacttacacaactttgagagagcaaaa
gaagaagctcttcaagtccaacccggtcctgaactagctcaagagaagcaagctttgttg
gcaagaattgaaatagcacaaggaaactatgatgaggctattcaaagtttggaagaagac
aacaaagacgattcaaaggtattaaagtggtacgctatatacttgaaagatgcctcggaa
cgtcccaacatcttggaacaagtaaacgacttgatagaaagtaaccttagtggaggaaat
cagatagtaactgcaaatattcttgttcacgaaggtcgctatgaacaagcacttgagttg
ttgcagcgtcaacccactttagaaactgcggcgttggaagtggagattttattgagaatg
aaccgactagatttggccaaaatattaacagaacgactcaatcaacttgaaggtgacgca
gtgttaactcatctcacaactgcttgggtctatctagcagaaggttcttatcgtgaggca
gaatatatatttgcagaactctctgaacgtcatggctcttctgatatgttattgaacgga
ttagccacagcatatataggtgaaggtaaatatcaagaggcagataatattttgcaagag
ttggtagctaagaatcccaactatccacctgcacttgtaaactgcctagtaaccagttgt
cacttgagtaaaactaaagaacaaatggacgcatatagaagacaactgaaaagagttagt
cctgattgcaagtggttgaaggaattggaaagttttgaggaacgtttgagtttacttgct
tga
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integrated database retrieval system
