Galdieria sulphuraria: Gasu_15470
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Entry
Gasu_15470 CDS
T02926
Name
(RefSeq) CCCH-type zinc finger-containing protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
gsl
Galdieria sulphuraria
Pathway
gsl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Gasu_15470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsl03021
]
Gasu_15470
03019 Messenger RNA biogenesis [BR:
gsl03019
]
Gasu_15470
Transcription machinery [BR:
gsl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Gasu_15470
Messenger RNA biogenesis [BR:
gsl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Gasu_15470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_12
zf-CCCH_4
zf-CCCH_3
zf-CCCH_RBM22
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
17089967
NCBI-ProteinID:
XP_005707833
UniProt:
M2Y5S4
LinkDB
All DBs
Position
Unknown
AA seq
224 aa
AA seq
DB search
MATKTSFDPAPIGNQIFAFERINNFDKQIEEDFNSPGTSTDLCPLFFSKSGCKKGSWCQY
RHARNDRLIVCKHWLRGLCKKAEYCEYLHEYDMSKMPECYFFSKFGECSNTECLYRHVDP
ESRRNECPYYARGFCRHGAKCRYRHIKKVACPAYLRGFCKDGPNCKFGHAKFEIPRLDEE
DADPYGFGRPRGKGPVPFFNLDSQKWSTGCKKNTPIRRRGQQKG
NT seq
675 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaagacatcttttgatccggctcctattggaaaccagatctttgcctttgaa
agaataaacaattttgataaacagattgaagaagacttcaactctcctgggactagtact
gacctttgtcctttgtttttttcaaaaagtgggtgcaaaaagggttcttggtgtcaatat
cgccatgcgagaaacgatcgacttatagtttgcaaacattggttgagaggactgtgtaag
aaagctgaatattgtgaatatttacatgaatatgacatgtctaaaatgcctgagtgctac
tttttttcaaagtttggtgagtgtagtaatacagagtgtttgtacagacacgtcgacccc
gaatctagaagaaacgaatgtccatactatgctcgtggtttttgccgacacggtgcgaag
tgcagatatcgtcatatcaagaaagtggcttgtccggcttatcttcgaggcttctgcaaa
gatggcccaaattgcaagtttggtcacgccaagtttgagattcccaggttagacgaagaa
gatgcagatccctatggttttggaagacctagaggaaagggacctgttccttttttcaac
ttagactcacaaaagtggtcgactggatgcaagaagaatacaccaatcagaagaagagga
caacaaaaaggctag
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