Galdieria sulphuraria: Gasu_19780
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Entry
Gasu_19780 CDS
T02926
Name
(RefSeq) exoribonuclease R
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
gsl
Galdieria sulphuraria
Pathway
gsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gasu_19780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsl03019
]
Gasu_19780
Messenger RNA biogenesis [BR:
gsl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
Gasu_19780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
CSD2
OB_RNB
OB_HELZ2
UBA_4
UBA
Motif
Other DBs
NCBI-GeneID:
17089446
NCBI-ProteinID:
XP_005707259
UniProt:
M2Y4H1
LinkDB
All DBs
Position
Unknown
AA seq
1293 aa
AA seq
DB search
MQTMEQHAQKLAKEFGVSFRRAKQALETAKGNVELAIDEILLSPESEEEAEPETISTVQV
YESSKTNGKSQCKESTVEPVSSVVNLKSETEEVDSLYSALCLHNSENKSDENSLDKKESS
QEAKSSTDLLTLRLLLPPFPSLLAIFHQLEQTQLKLFRDSIYIKKQTVSDGDSEQRPKQV
QWTRRKKELLLEKKQRKQREVFVLSLLGSELYLRPLECFDWSKLCSVGSSITIPTLNVLE
FFFEVLIGDKSNHLARSKVINTVILKSTFARITKQKRKLLKLALSDPYSPILFFPDSVLD
DTCLASPKQPLEESFYNYEREIRAARILFQMKSLDCFILYVDEKNIVANESPIRTIADNL
YLCSILSYSRRMDDSRFLDMVLSLYDSFLAENIWYQEGTHSLSGLPFKAEENELEEQMVE
SEEVSKRTIIGIFRVERNRKIARVSFVFIPAEHFGKAIHGDKVMIEINTVNGKSQGKVVS
ILERRADSFVASYFERDSTEDSVVNEEDDETVLYTKSQRLGHLFAPMDQRLPLCIVFGRN
LEKYRNQRVVLRFRSWKWHEKYPEAYLVETLGYVGDVEAETRAVLTTCGVRDFDYPTSVF
EEIGLTSSLSSFSCSFPSSVCMDKRLDIRNSRLVFSIDPSGSQDIDDALSLYLIKDSIYE
VGVHIADFAAWVPSGSFIDVEAMKRGTSVYLVDRRISMIPSVLSENLCSLRQYHDRLSLS
VFFFIDFANQGQLVDISEEFLDKEFVQKAVKSSADKGVYFARCILRSCGELHYDEVDCCL
KGERTSLGTTDDAQVIQNTRILADIAKMFRQRRIRDGAITNLTSGELRFQFDEEKRIQQV
STKIDLEIMSVVAELMIATNAFVASHLLAVCPNDALLRRHDAPPVEKISQFISTAASLDF
LGIHLENFLQGQQQQSNTISTESFISNLEEQLDAASLDNSSWGKLISSLATRAMSEAEYF
AASSGKDTRHYALGLDAYTHFTSPIRRYPDVIVHRALLRATGLEESDSDSSPPDFPGALE
ELAEHLNIRHREAKMASEMSNTLFFSLYFQSQPGLVTYAILIAIQEQPLLGFSVFLPRFS
LYGFVPLMDSVSNQVILPALNMQLDQKDDFSEVFVAEKDCRVLQAGCSLRIAENEKELYC
VNEQQQIVAEWQLGGTVKVGVWASSNKYREPGVKMLLASRDCFESKQSSTEEKRGIPEKK
PISTFQYNRQTKPKEQVVQRVLATSHEADRGVKNENSAVSRDFHRGLFRIWNIRDRDSLK
RNTFYYTMTQGRIPIENKIRKCYTYSSDMLLSL
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaatggaacaacatgcacaaaagttagcaaaggagtttggagtgtcgtttcgt
cgagcaaagcaagctctagaaactgccaaaggaaatgtagaacttgccatagacgagata
cttctctctccagagtcggaagaagaagcggaaccagaaacgatatccactgttcaagtt
tatgagtctagcaaaacaaacggaaaaagtcaatgtaaagagtccacggttgaaccagtc
tcttctgtggtcaacttgaagtctgaaaccgaagaggtcgattctttgtatagtgcactt
tgtttacacaacagcgaaaacaagagtgacgaaaatagcttagataaaaaagaatcttct
caggaggcaaagagcagtactgatctgttgactttaaggttgttgcttccaccttttcca
tctctgcttgctatatttcatcaactagaacagactcaattgaagctgtttcgggatagt
atatatataaagaagcaaactgtttccgatggagactctgaacagcgtccaaaacaagtt
cagtggacacgtagaaagaaggagttgttacttgaaaagaaacaaaggaagcaacgagaa
gtttttgttctcagtttacttggatcggaactttatcttcgtcccttagaatgcttcgac
tggtcgaaactttgttctgttggaagttctataacaatacccactttgaacgttttggag
tttttctttgaagtgttaatcggcgacaaaagcaatcatcttgctcgatcaaaagtaatc
aatacggttatcctgaagagtacctttgctagaataactaaacagaaacggaaacttctt
aagctggctctatcagatccttattctccaattcttttttttcctgattcagtattggat
gacacatgtttagcatcgccaaagcaaccattagaggaatctttctacaactatgaaaga
gagataagggctgcaagaattttgttccagatgaagagtttggattgttttattctttat
gtagatgagaagaatattgtagcgaatgagtctcccattcgcactatagcagataatcta
tatctttgttctattctatcgtattcgagacgaatggacgatagtcgatttttagatatg
gttttatctctttatgactcttttctagctgaaaatatttggtaccaagaaggaacacat
tcattgtctgggctgccttttaaagcagaagagaatgaattagaggaacagatggtagaa
tccgaagaggtttcaaagcgcacgattattggaatttttcgagttgaacgaaatcgtaaa
attgctcgagtatcttttgtgtttattcctgctgaacattttggtaaggccattcacggt
gataaagtgatgatagaaataaacacggtgaatggtaaaagtcaaggaaaagttgtttcc
attttggaacgaagagcggactcctttgtagcatcttatttcgaaagggactctacggaa
gactctgttgtcaacgaagaagatgatgaaactgtcttgtatacaaagtcacaacgttta
ggtcatctttttgctccgatggatcagaggctaccactgtgtatagtttttggtagaaat
ttagagaaatacagaaatcaacgcgttgttttacgctttcgtagctggaaatggcatgaa
aagtatccagaagcatatttagtagagacacttggttatgtgggagatgtagaagcagag
actcgagcggttttgactacctgtggggttcgtgactttgactacccaacaagtgttttt
gaagagatcggtttgacgagtagcttgtcttcattttcatgttcatttccgtcgtcagtt
tgtatggataagagattggatattcgaaactctcgtttggttttcagtatcgatccttct
ggaagccaagatatcgatgatgctttatctctttatctaattaaagatagtatttatgaa
gtgggagttcatattgctgattttgctgcttgggtgccatccggaagctttatagatgtg
gaagcgatgaaacgaggaactagcgtgtatttagtggacagaagaataagcatgattcct
tcagtccttagtgaaaatctatgttcgctaaggcagtatcatgaccgcttaagtctctct
gtatttttcttcatagactttgcgaatcaaggtcaacttgtggatatctctgaggaattt
ttggataaggaatttgttcaaaaggctgtcaagagtagtgcagataaaggagtgtatttt
gcacgttgtattttgcgttcatgtggtgaacttcattatgatgaggtggactgttgtttg
aaaggagaaagaacatcgctgggtaccacagatgatgctcaagtgattcaaaatacccga
atattggcagatattgccaaaatgtttcgtcaaaggagaatccgagatggagctattacc
aacttgacctcaggagagttgcgttttcaattcgatgaagagaaaagaattcaacaagta
tccacaaaaatagacttagagattatgtcggtagttgctgaactaatgattgctacgaat
gcttttgttgcctcacatctactcgcagtatgtccaaatgatgcgctgttaagaagacat
gatgcgcctcctgtagaaaagatttcacagttcatatccactgcagcgagtttggatttt
cttggaatccacctggagaactttctacaaggccaacaacaacagtccaatactatttca
acggagagttttatttccaatttagaagaacagttggatgccgcctctcttgacaactct
tcttggggtaaattgattagttctcttgcaaccagagcgatgtctgaagcagaatacttt
gctgcatcttccggaaaggacaccagacactatgctttgggtctggatgcatatacccat
tttacgtctcctattcgtcgataccctgatgtgatagtccatcgagcactattaagagct
actggactggaagaatccgacagcgactcatctccaccagattttcctggagctttggaa
gaactagcagaacacttgaatattcgtcatagagaggcaaagatggcatctgaaatgtcc
aataccttatttttctctctatattttcaatcccaaccaggtttggtaacctatgccatt
ttaatagctattcaagaacaacctttgctgggattttctgttttccttccaagattttcc
ttgtatggttttgttcctttgatggattccgtatccaatcaggttattttacccgcattg
aatatgcagttggatcagaaagatgatttttcggaagtatttgttgcagaaaaagattgt
agagtccttcaagctggttgtagtttgcgaatagcggagaatgaaaaggaattgtattgt
gtgaatgaacaacaacagatagtggcagaatggcaattgggaggtacagtaaaagttgga
gtttgggcaagctcaaataaatatagagaacctggagtaaaaatgctattggctagtaga
gactgttttgaatcgaaacagtcctcaacagaggaaaagaggggaattccagagaaaaag
ccaatttctacatttcaatataatcgacagacgaaaccaaaagaacaagttgtacagcgg
gtcttagctacatctcatgaagccgatagaggtgtgaagaatgaaaattcagcagtatcg
agagactttcatcgagggttatttcgtatttggaatattcgagaccgcgatagtttgaaa
cgaaatactttctattatacaatgactcaaggacgcattccaatagaaaacaagattaga
aaatgttatacgtactcatcggatatgttattgagcttgtga
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