Galdieria sulphuraria: Gasu_41650
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Entry
Gasu_41650 CDS
T02926
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gsl
Galdieria sulphuraria
Pathway
gsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gasu_41650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsl03019
]
Gasu_41650
03041 Spliceosome [BR:
gsl03041
]
Gasu_41650
03009 Ribosome biogenesis [BR:
gsl03009
]
Gasu_41650
03016 Transfer RNA biogenesis [BR:
gsl03016
]
Gasu_41650
Enzymes [BR:
gsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Gasu_41650
Messenger RNA biogenesis [BR:
gsl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Gasu_41650
Spliceosome [BR:
gsl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Gasu_41650
Complex C
U4/U6.U5 tri-SnRNP related factors
Gasu_41650
Ribosome biogenesis [BR:
gsl03009
]
Eukaryotic type
Pre-60S particles
Helicases
Gasu_41650
Transfer RNA biogenesis [BR:
gsl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Gasu_41650
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Anti-RecBCD_p2
ATPase_2
Motif
Other DBs
NCBI-GeneID:
17087167
NCBI-ProteinID:
XP_005704838
UniProt:
M2XXG7
LinkDB
All DBs
Position
Unknown
AA seq
1062 aa
AA seq
DB search
MSDDLFDVFDATKAKRPQDAILEAMETAETLEELDDDEDVTEDQAIEPPEKWRKLELTIN
EERRKNSDTQIVDNFRENKKKPRSFHLQEYCSDSVNETCTTDSDLKTSCIHDVSLPAEYG
EYLFEPKETSRKPAKEYKFTLDAFQRESIRCLERNESVLVSAHTSAGKTAIAEYAVAMSL
RDGQRVIYTSPIKALSNQKYRELYEEFIDVGLMTGDVTINPSAGCLVMTTEILRSMLYRG
SEVIREVAWVIFDEVHYMRDKERGVVWEETIIMVPENVRFVFLSATIPNAREFAEWIVQL
KNQPCHTIYTDSRPVPLQHYLFPAGGDGLYLVVDEKGQFRDDTFEKALSKIGENSIKDTS
KGAEMNKKNKKAAKGASDVYRIIKLIMEREYDPVIVFAFSRRECEALALQLSKLELNTDE
QKSLVEQVFVNAMDSLSEDDKKLPQITAALPLLKRGIGIHHSGLLPILKEVTEILFQEGL
IKVLFATETFAMGLNMPAKTVVFTAVRKFDGEAFRFISGGEYIQMSGRAGRRGLDERGIS
ILTVDERIQPETARAILKGNADPLRSSFHLEYNMLLNLLRSEEANPEYVISRSLAQFQAD
RALPDNEAKLNELLRQKDELKISMEDDVKEFAAYKDQLERLRSKVRNIVFQAKNVLPFLQ
VGRLARFCVQDKEVRDFGWGVVVNFTKMNTSQVKEQGLRDKFLIDALVFSKPLTETNEKV
FVPPKGEEDIAQASWNVLPFHLSALDGLSSIRVYMPKDLRPRENRSAVGKSVSEVMRQFP
KGIPLLDPVEDMGIKDEEFRKLIRQAESVEDQLFSSKLAQKYSLSLHTTYPEELSRLMDS
YQRKEQILVEIKAVKRQIRLGQGLILREELKRMLRVLRRLGFINHENIVEKKGRTACEVN
TADELVLTELMFHGAFNEIKAEVAVALLSCFVYDEKQDEQLQFSDEELKAAFQTLQNIAR
RVGTVTKECKIPIDVDEYVQSFDPSMMNVVYAWCRGAIFAEICKMTHIFEGSIIRCMRRL
EELLRQLSAAAHSIGNEELEHLFEKGSQLLKRDIAFQASLYL
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgatttgtttgatgtctttgacgcaaccaaagcaaagagacctcaagatgcc
atattggaagccatggagactgcagaaactttggaggaattagatgatgacgaggatgtt
acagaagaccaagcaattgaacctccagaaaagtggagaaagctagagttgaccatcaac
gaagaaagaagaaagaatagtgacacacaaatagtcgacaacttccgtgaaaataaaaag
aaaccgcggtcttttcacttacaggagtattgtagtgattctgtgaacgaaacttgtaca
acagacagtgacttgaagactagttgcattcacgacgtttccttacctgccgaatatgga
gaatatctttttgaacctaaagaaacaagtcgtaaaccagcaaaagaatataaatttaca
ctcgacgcttttcaacgagagagtattcggtgtttggaaagaaatgagtcggtgttggtt
tccgcacatacttcagcaggaaaaaccgccatcgcagaatatgctgtcgctatgtccctc
agagatggtcaaagggtcatttacacttctcctatcaaagcacttagtaatcaaaagtat
cgagaactttacgaggaatttattgacgtaggtttaatgacaggagacgtgactatcaat
cctagtgcgggttgcctagtaatgacgactgaaatcctcagaagtatgttatatcgtggg
tctgaagtcataagagaagttgcttgggtcatatttgatgaggttcattatatgagagac
aaggaacgcggagtagtttgggaggaaactattataatggttcctgagaatgttcgtttt
gtatttttatcagctactattcctaatgccagagagtttgctgaatggattgttcaactc
aagaatcaaccttgtcatactatttacacggattctcgcccagttccgttacagcattac
ttatttccggctggtggagatggattgtatttagtagtagatgagaaaggacagtttcga
gacgatacttttgaaaaagcattgtctaaaattggagaaaactcaatcaaggacacttct
aaaggagcagaaatgaataagaaaaacaaaaaggctgctaaaggtgcttccgatgtctat
cgtattattaagttgattatggagcgtgaatacgatcccgtcattgtatttgccttttct
agaagagaatgtgaagcattggccttacaactctccaaattggaattgaacacagacgaa
caaaagtctcttgtagaacaagtattcgtgaatgcaatggatagtttatctgaagatgac
aaaaaattgcctcaaatcactgcagcacttccactcttgaagagaggcatcggtattcat
cattctggcttacttcctattttgaaagaggttactgagattcttttccaagagggactt
attaaagtactatttgccacagaaacctttgcgatgggattgaacatgcctgcaaagact
gtggtttttactgcagttcgtaaatttgatggagaagcctttagatttattagtggagga
gaatatatacaaatgagtgggagagccggtcgaagaggtttagatgaaagaggaatatcg
attttgacagtggatgaaaggattcaaccggagaccgctcgagccatattgaaaggtaat
gcggatcctcttcgttcatcctttcatttggaatacaatatgcttcttaatttgttgaga
tcggaagaagccaatccagaatatgtaatatctcgctctttagcacagttccaagcagat
agagcacttccggataatgaagctaaactaaatgagcttttaagacaaaaagacgaattg
aaaatttcgatggaagatgatgtaaaagaatttgctgcttacaaagaccaattggaaaga
cttcgaagcaaagtccgtaacattgttttccaagccaaaaatgtacttccatttttacaa
gttggaagacttgctcgattctgtgtacaagacaaagaagttcgcgactttggatggggc
gtagtagttaatttcacaaaaatgaatacttcacaagtaaaagaacaaggtctccgagat
aaatttcttatcgatgcattagtttttagtaagccattgactgaaaccaatgaaaaagtt
ttcgttcccccaaaaggagaagaggatattgcacaagcttcttggaatgttttgccattt
catttgagtgcattggatggtttgtcttccattcgtgtttatatgcctaaagaccttcgt
ccacgggaaaatcgatcagcagtgggaaagtctgtttctgaagttatgcgtcagtttcca
aagggcattcctttacttgatcctgtagaagatatgggtatcaaggatgaggagtttaga
aagttgattcgacaagctgagtctgtagaagaccaacttttctcatccaaacttgcacaa
aagtattctctgtcgcttcacacaacttatccagaagaactttccagactgatggattcc
tatcaaaggaaggaacaaattctagtagaaatcaaggcagtcaaaagacaaattcgttta
ggccaaggacttattttacgtgaagagttgaaacgaatgttgcgtgttttacgtcgttta
ggattcatcaaccatgaaaatattgtggaaaagaagggccgaactgcatgtgaagttaac
acagcagacgagttggtcttaacagaattgatgtttcacggtgcatttaatgaaatcaag
gctgaagttgctgttgctttactgtcttgttttgtatatgacgagaaacaagacgaacag
ttacaattctctgatgaggaattgaaagctgcatttcagactttgcagaatatagctcgt
agggttggtacggttacgaaggaatgtaagatacctattgatgtggatgaatacgtacaa
tcttttgacccgagtatgatgaatgttgtttatgcttggtgtcgtggagccatttttgct
gaaatctgtaaaatgacgcatattttcgaaggaagtattattcgttgtatgcgtcgtttg
gaagagttgctaagacagctttctgcagctgctcatagtattggcaacgaagaattggag
catttatttgaaaaaggaagtcagctattgaaacgagatattgcttttcaagcttcctta
tatttataa
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integrated database retrieval system
