Galdieria sulphuraria: Gasu_49670
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Entry
Gasu_49670 CDS
T02926
Name
(RefSeq) 5'-3' exoribonuclease
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
gsl
Galdieria sulphuraria
Pathway
gsl03008
Ribosome biogenesis in eukaryotes
gsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Gasu_49670
09123 Folding, sorting and degradation
03018 RNA degradation
Gasu_49670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsl03019
]
Gasu_49670
03009 Ribosome biogenesis [BR:
gsl03009
]
Gasu_49670
03016 Transfer RNA biogenesis [BR:
gsl03016
]
Gasu_49670
03036 Chromosome and associated proteins [BR:
gsl03036
]
Gasu_49670
Messenger RNA biogenesis [BR:
gsl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Gasu_49670
mRNA degradation factors
5'-3' decay
5' exonucleases
Gasu_49670
Ribosome biogenesis [BR:
gsl03009
]
Eukaryotic type
Pre-60S particles
RNases
Gasu_49670
Transfer RNA biogenesis [BR:
gsl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
Gasu_49670
Chromosome and associated proteins [BR:
gsl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
Gasu_49670
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
SH3_12
XRN1_D2_D3
XRN1_D1
Motif
Other DBs
NCBI-GeneID:
17086421
NCBI-ProteinID:
XP_005704039
UniProt:
M2XVS4
LinkDB
All DBs
Position
Unknown
AA seq
1343 aa
AA seq
DB search
MGVPKFYRWVSERYPLTIHKVVPSVVPDVDNFYLDANGILHNCARPKDSQEPFPCQYPSE
EEIFLETFNYIDMLFSMVRPKRLVYIAIDGVAPRAKMNQQRARRFRTAKDRAQEMENRIK
QGKPVPQRFFDSNCITPGTHFMASFSEALEYLVHKKITEDKSWATVEVILSTTNVPGEGE
HKIIEYIRRKKLSGEWEANLSHCLYGLDADLIMLSLVTHEPHFILLREQTDLSKLFVSKK
GNLAVEATPLDRCISGEFEFFSIGVLREYLDSEFCTLPITFYNLENCIHDFIFMCFLVGN
DFLPQLPTLNIAEGALDTMLTLYKKLLPLFGGYLIENGNIVLERLEIFLSKLGLLERLIV
NRRLEAIAQSKGRAPRMVDIGTSHDDIWGLGNDCNENTEETGIEPWTKEDIEQALNEAYV
ASTDPLMESIKKSYYRDKLNMDLEDKDSLEKLKFTYLKGLLWTWKYYYSGCPSWRWFYPY
HYAPMASDLVGLTGVTNICDFSASEPFLPFQQLLAVLPPQSAWCLPTALQKLMNDKSSPI
FRFYPSDFEVDMDGKRNAWEGVIKLPFVDESLLLEAYHSIPNELFSEEERNRNACRQTMI
YRRHQMNENVKYIKRKIRSPFPNHLRDIEETAAICEPLSLPVVDGHHDGFEPHLFPGTSI
GASSPGNYPTLKSLSFSIYYAKIGVNVFGIPSKRESVIIQPQTNHNQGSTTTFMNVVNGQ
SFFSPGKRVLVEYPWRCEALVWSVINCTGEKVSKQPGTSELFIHETVDPNFFIVQLEQFR
KQALSRNALDIGEVQYMVGVHLCDKRDPTSGAIVSYCNEDIWLPVSVIVPIELSTRMKRK
QGYITSTISELNRGDRVVYIGKGPHFGRTALVVSHIKRPKNDSEFYSDWVKIKFLNQKTV
EWDDSKIITNKDEQVTWFSLSNTAELLKSTTYAVSRITSSVFVKSSKSNDRPEDIGLRLK
FVSKSLYVPGYCRLLTSSNSYEFSYSAIQVLLEYKQKFPQVFDILDNTFHDSSLQNVGSK
YIDMGVNSEIVVTRIKEWLKSLELAKLPLLHSSSEVMSKEEIANVEQKLKRDQVQSLDEQ
FLVVPRELLLFGDEHEKQRNKTNLAGIQSLKENVCLKDRVVNISATGPVPFGFHGTVVGI
HGTELEVVFDEPFPAGTDLHHRCPAYRGKTLSRNTVLKLHNSEKPLKSNSSDFSYSKISS
HSGHDKMLRNQRSKRTMNVQTPTKPLFLDSFKHSLHSKPKKQSKADSWIESQLTHRLSQL
LNDSSVQNESQLEEERDSRKKMTTPDNGDPVQIWEQLQEREHQTFQFKNKLNAKSPPYKK
SYQRVYTWRRVKQPSSIEEKKDS
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttccaaagttttatcgttgggtatcagaacgttatccattaactatacataaa
gtagttccttctgtagtaccagacgtggataacttttatttggatgccaacggaatatta
cacaattgtgctcgaccaaaggatagtcaggaaccctttccttgtcaatatccttcagaa
gaagaaatatttctggaaactttcaattatatcgatatgttattttcgatggtacgtccc
aaaagattggtttatattgcgatagacggtgttgcacctcgagccaagatgaaccaacaa
cgagccagaaggtttcgaactgccaaggatcgagcacaagaaatggaaaaccgaatcaaa
caaggaaagcccgttcctcaacgtttttttgattccaattgtattactccaggcactcat
tttatggccagcttttccgaagcgttggaatatttagttcataagaaaataactgaagac
aagtcttgggctactgtggaagttattctttctactaccaacgttccaggagaaggagag
cataaaatcatagagtatatacgtcgtaaaaagctaagtggagaatgggaagccaatcta
tctcactgtctgtatggtttggacgcagacttgatcatgctttccttagtgactcatgaa
ccacactttattcttttaagagaacaaactgatctgtccaagttatttgtttccaaaaaa
ggaaatttagcagtagaagcaactccattggatcgctgtatttcaggagagtttgaattc
ttttccatcggagtgttgagagaatatctggatagtgaattttgtacacttcctattact
ttttacaatttagagaattgtattcatgattttatttttatgtgttttctagttggaaac
gattttttgcctcaactacccaccttgaatattgcggaaggagctttggatactatgttg
actttatataagaaattgttacctttatttggtggttatttaattgaaaatggaaatatt
gttttggagagattggaaatatttctttccaaattgggtttattggaaaggttgattgtg
aatagaagactcgaggcaattgctcagtccaaaggaagagcacctcgaatggtggatatt
ggaactagtcacgatgatatatggggtttaggaaatgattgtaacgagaatacagaagaa
actggtatagagccctggacaaaagaagacattgagcaagcattgaatgaagcatatgtg
gcttctacggatcctcttatggaatctataaagaaaagttattatcgagacaagttaaac
atggatttggaagacaaggatagtttagaaaagctcaagtttacatatcttaaaggattg
ttatggacatggaaatattattatagtggttgtcccagttggagatggttttatccttat
cattatgctccaatggcttccgatttggttggtttaactggggtaacaaatatttgtgac
tttagtgccagtgaaccttttttgccatttcaacaacttttggctgtgttacctcctcaa
agtgcttggtgtttaccaactgctttacaaaagttgatgaatgacaaatcatcacctatt
tttcgattttatccatcagactttgaagtggatatggatggaaagagaaatgcatgggaa
ggtgtaatcaaacttccatttgtagatgaaagtcttcttttggaagcctaccattccata
ccaaatgagttattctctgaagaagaaaggaatcgaaacgcttgtcgacaaactatgatt
tatcgacgtcatcaaatgaatgaaaacgtaaagtacattaaaaggaagatacgttcacca
tttcctaatcatttacgtgacattgaagagacagctgcgatttgtgaacctttgagtctt
ccagtggtcgatggtcatcatgatgggtttgaacctcatctctttcctggaacgtccata
ggtgcttcttctcccggtaactatcctacattgaaaagcttatccttttccatttattat
gccaagattggtgtaaatgtgtttggtattccaagtaaacgagaaagcgtgattatccaa
ccacagaccaatcataatcaaggatccacgaccacttttatgaatgtggtaaatggacag
tcttttttttcaccaggaaagagagttttggtagaatatccttggcgttgtgaggcattg
gtgtggtctgtgataaattgtacgggtgaaaaggtttctaaacaaccgggaacatcggag
cttttcattcatgaaactgttgatcccaactttttcattgtgcaattggaacagtttaga
aagcaagctttgagtagaaatgctttagatattggagaagttcaatatatggttggtgtt
catctttgtgataaaagagaccctacttctggtgccattgtttcttattgtaacgaagat
atttggttacctgtttctgtcattgtacctattgaactttccactagaatgaaaaggaaa
caaggttatataacatctaccatttcggagttgaacagaggtgatcgagttgtctacatt
ggtaaaggtccacattttggaagaacagctttggtagtaagtcatatcaagagacccaag
aatgactctgagttttattcagactgggtgaaaatcaaattcttaaaccaaaaaactgta
gaatgggatgatagtaagatcataacgaacaaagatgaacaagtcacttggttttcatta
tctaatactgcagagttattgaagagtacaacatatgctgtatcgaggatcacaagctcc
gtgtttgtcaagtcttccaagtccaatgaccgacctgaagatattggacttcgtttgaaa
tttgtatcaaagagtctttatgttcccggttattgtcgattactgacgtcgtccaactct
tatgaattttcttattcagccatacaagttctattggaatacaaacagaaatttccacaa
gtgtttgacattcttgacaacacttttcacgattcttctcttcagaatgttggctccaaa
tacatcgatatgggagtgaatagcgaaattgtggtaactcgtatcaaggaatggctcaaa
tctctcgaacttgccaagttaccactactacacagcagcagtgaagtgatgtctaaggaa
gagattgcgaatgtagaacaaaagctcaaacgtgatcaagtacagtcgctagatgaacaa
tttttagtagttcccagagaacttttgctttttggagatgaacatgagaagcaacgtaat
aagaccaatcttgcaggtatacagagtttgaaggagaatgtttgtttgaaagacagagtt
gtcaatatttcagccactggacctgtaccttttggttttcatggtactgtggttggcata
catggaacggaattggaggttgtatttgatgaaccctttcctgcaggtactgatcttcat
catcgatgtccagcatatcgaggaaagacgttaagtagaaatactgtattgaaattgcat
aacagcgagaaacctttgaagagcaattcatcagacttttcatattccaaaatatcttct
cattctggtcatgacaagatgttgaggaatcaacgctcaaagagaacaatgaatgttcag
acgcctacaaagccactttttttggattctttcaaacactctttacattccaaaccaaag
aaacagtccaaggccgactcatggattgaatctcaattgacacatcgtttatcccaactt
ttgaatgattcttcggttcagaatgaatcccaactagaggaggaacgtgattccagaaag
aagatgacaactccagataatggagaccctgttcagatctgggaacaacttcaagaaaga
gaacaccaaacattccaattcaagaacaagttgaatgcgaaatctccgccatataaaaag
tcctatcaacgagtctacacttggcgacgtgtaaaacaaccatcatcgatagaagaaaag
aaggattcgtaa
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integrated database retrieval system
