Gracilibacillus salinarum: MUN87_00575
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Entry
MUN87_00575 CDS
T09433
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gsm
Gracilibacillus salinarum
Pathway
gsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUN87_00575 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsm03019
]
MUN87_00575 (rnjA)
Messenger RNA biogenesis [BR:
gsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MUN87_00575 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Raco_middle
Motif
Other DBs
NCBI-ProteinID:
UOQ85435
UniProt:
A0ABY4GM34
LinkDB
All DBs
Position
complement(124603..126270)
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VQNQDKIKGLFITHGHEDHIGGIPYLLREINVPIYAGKLAMGLIRNKLDEHGLLRKAKLH
TYQEDDIFKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNVVHTGDFKFDFTPVGEPANLSR
MAEIGKEGVLCLLSDSTNSEVPGFTLSERVVGDSINDIFSRVDGRLIFATFASNIHRLQQ
VVEAAVKHNRKIAVFGRSMEGAIKIGQELGYIRAPKNTFIEAHQINQLPANEVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTLSVSRIINQLYRAGAEVIHGPL
NDIHTSGHGGQQEQKLMLRLIKPKYFMPIHGEYRMLKEHTKLADSCDIPFKNSFIMDNGE
VLALGKDHAAIAGKIPSGSVYVDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFQI
ASGPDIISRGFVYMRESEDLINEAQKLVSNHLNKVMERRTTQWSEIKNEITDTIAPFLYD
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgatcagactgcagtttttgcattaggtggtttaggtgaaatt
gggaaaaacacgtacggtgttcaatttcaggacgaaatcatcttaattgatgcaggtatc
aaattccctgaagatgagttattgggaattgattatgtaatacctgactacacctacctt
gtgcaaaatcaggacaagataaaaggattatttatcactcatggtcacgaagaccatatc
ggtggtattccttatttacttcgcgagataaatgtgcctatctatgcaggtaaattagca
atgggactaattcgaaataaattggatgaacatggtcttcttcgtaaggcaaaattacac
acttatcaagaagatgatatttttaaattcagaaaaacagctgtgtcgttctttagaaca
acgcacagtattcccgattcctatggtattgttgtgaaaacccctcctggtaacgttgtg
cataccggagactttaaatttgattttacaccggtcggagaaccagccaacttatcaaga
atggctgaaatcggtaaagagggtgtactatgtctgttatcagatagtacaaacagtgaa
gttcccggatttacgttatctgaacgagtagttggtgacagtattaatgatattttctct
agagtcgatggcagattaatatttgctacgttcgcatccaatattcaccgcttgcaacaa
gtcgtggaagccgccgttaaacataaccgtaaaattgccgtattcggccgcagtatggaa
ggtgccataaaaataggacaagaacttggctatattcgtgcgccaaaaaatacgtttatt
gaagcacaccaaattaatcagcttccagctaacgaggtgaccatcctatgtactggttct
caaggggaaccaatggcggcattatcaagaattgctaatggtacacaccgtcaaattcaa
attatacctggtgacacggttgtattctcttcttcaccaatccctgggaatacgctaagt
gtcagccgaattatcaatcaattatatcgtgcaggtgcagaagtcattcacggaccatta
aatgatattcatacatctggccacggtggacaacaagaacaaaaattaatgctgcgttta
attaaacctaagtattttatgccgattcacggggaatatcgtatgttgaaagaacatacg
aaactggctgacagttgtgacatcccgttcaaaaacagctttatcatggataatggtgaa
gtattagcattagggaaagatcacgctgcaattgcaggaaagattccttccggttctgtc
tatgttgatggcagcggtattggagatattggtaatatcgtattacgcgatcgacgaatc
ctttctgaagaagggcttgtcatcgtcgtggtcagcatcaatatgaaggaattccaaatc
gcttccggtccggatattatttcacgaggtttcgtgtatatgagagaatccgaagactta
attaacgaagcgcaaaagcttgtgtctaatcatttgaacaaagttatggagcgtcgcaca
acgcaatggtctgagattaaaaacgaaatcaccgataccatcgctccattcttatacgac
aaaaccaaaagacgtccaatgatcttacctattatcatggaagtataa
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