Gracilibacillus salinarum: MUN87_01670
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Entry
MUN87_01670 CDS
T09433
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
gsm
Gracilibacillus salinarum
Pathway
gsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUN87_01670 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsm03019
]
MUN87_01670 (rny)
Messenger RNA biogenesis [BR:
gsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MUN87_01670 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
DUF2370
DUF3139
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
UOQ85642
LinkDB
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Position
344439..345995
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AA seq
518 aa
AA seq
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MDYNIVISILLTFVGIVVGYLIRKQIAEKKISSAEELAKQIVEEGYKNAEVAKKEALLEA
KDENHKIRQQADEELRERRAEIQKLESRLMQKEENLNRKDQTLDKRELLLEKKEGSLTEK
QQQIEEMESKVGEMLSEQEAELERISGYTTEQAKQIILQRVEEEVTHESAMIIKEAENRA
KEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGI
DLIIDDTPEAVILSGFDPIRREIARIALEKLVQDGRIHPARIEEMVDKSRREVDEYIREF
GEQTTFEIGVHGLHPDLVKILGRLRYRTSYGQNVLKHSTEVAYLSGLLAAELGEDQTLAR
RAGLLHDIGKAIDHEVEGSHVEIGKELATKYKENDVVINAIASHHGDEEATSVISVIVAA
ADALSAARPGARSETLENYIKRLEKLEEISESYAGVEKSFAIQAGREIRIIVKPDEIDDA
ESTKIARDIRKRIEDELDYPGHIKVTVIRETRSVEYAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggactataacattgtcatctccattttgcttacatttgtcggtattgttgttggttat
ctgattcgaaaacaaattgctgagaagaagatttcgagtgcagaagaattagcaaaacaa
attgtagaagagggctataaaaacgctgaggttgcaaagaaagaagcattactggaagca
aaagacgaaaaccacaaaattcgtcaacaagctgatgaagagctcagagaacgtcgggca
gagattcaaaagcttgaaagtcgtctcatgcaaaaggaagaaaatcttaatcgtaaagac
cagacactggacaagcgtgagctattgctagagaaaaaagaaggttcgctgacagaaaaa
caacaacaaattgaagaaatggaaagcaaagttggagaaatgttaagcgagcaagaagca
gaattagaacggatttcaggatacacaacagaacaagcaaaacaaattatcttacagcgt
gtcgaagaagaagtcacacatgaatcagcaatgatcataaaagaggctgaaaatcgtgca
aaagaggaagctgataagaaagctaaaaatattttatcgcttgctttgcaacgttgtgcc
gctgatcacgtcgctgaaacgactgtttccgttgtcaatcttccgaatgatgagatgaaa
ggtcgaataattggtcgagaaggtcgaaatattcgaactttagaaacactgacaggtatt
gatttaatcattgatgatacaccagaagcagttatcttatctggtttcgatccaattcgt
cgggaaattgctcgaattgcgcttgagaaacttgtgcaggatgggcgaattcacccagca
agaattgaagaaatggtggacaaatcgagacgtgaggtcgatgaatatattcgtgaattt
ggagagcagacaacatttgaaataggcgttcatggtcttcatcctgatttagtgaagata
ttaggacgattaagatatcgaacaagctatggacagaatgtattaaaacactctacagaa
gtggcttacttatccggtctattagctgctgagctcggagaagatcaaacacttgctaga
cgtgccggtttattacacgatattggtaaggctatcgaccatgaagtggaaggtagtcac
gttgaaatcggtaaagagctagcgacgaaatacaaggaaaacgatgtagtaatcaatgcc
attgcttctcaccatggtgatgaagaagcgacatctgttatttcagtaattgtcgctgcc
gcggatgcattatctgctgcaagacctggagcgagaagtgagacacttgaaaactatatt
aagcgattagaaaagctggaagagatctctgagtcatacgctggcgttgagaaatctttt
gctattcaagctggtagagaaatccgcattatcgtgaagccagatgaaattgatgatgca
gaatcaaccaaaatcgcacgcgatattcgaaaacgtatagaagatgaactggattatcca
ggacatatcaaagtaaccgttattcgagaaactcgttcagttgaatatgcaaaatag
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