Gracilibacillus salinarum: MUN87_03995
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Entry
MUN87_03995 CDS
T09433
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gsm
Gracilibacillus salinarum
Pathway
gsm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUN87_03995 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsm03400
]
MUN87_03995 (ligD)
Enzymes [BR:
gsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUN87_03995 (ligD)
DNA repair and recombination proteins [BR:
gsm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUN87_03995 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UOQ86070
LinkDB
All DBs
Position
787975..789720
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AA seq
581 aa
AA seq
DB search
MWKPMLPILTSHAPTDRQWLYQIKYDGFRCGLYWDADGVTILSRNGHDLTAYFPEITNWC
KQHHDLYESNLPLLLDGEIVQLLTSYRCNFSQIQRRSKSKRNAKNQLQVTFIVFDLLQGG
ETNFRNKPFIERDQALDNLFTKKTGTIYKAPTFELVEDVKKLVDLHQAEGFVAKKKNAPY
KEGKRSDSWLKIKNYRTIQGIVTKWNSDNDYFTISYYADNKLQLLGKCKNGLKNDEKETL
QTFIKKNGKKVNGTTWNVAPSVCLNIDCLDVSNHELREPHFAAFRFDIEPADCTKDAVQL
GLAQIPECISVSRLEKLLFPNYSKLEYLCYLRTMAPYMLPWIMDRKLTIIRYPDGVDAPS
FYQKHLPDYAPAFLRPMLSTDEEAAIYIQNFESLLWFGNHAGLEFHMPFNKQHHQEPDQI
VFDLDPPSLKEFYLAVRAASLIKEMMENQKLKPYIKTSGRTGLQIHIPINNWTYQDTREL
MEATANVLIQAYPDQFTSERLIKNRGNRLYIDYVQHAEGKTIIAPYSTRATKQATVATPL
FWEEVNETLDPTSFTIRSVLKRIKDKGCPFFDFYTHFEKQE
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
gtgtggaaaccaatgttgccaattcttacatcacatgcaccaacagatcgccaatggtta
tatcaaataaaatatgatggattccgttgtggcttgtattgggatgcggatggagtcact
atactaagtcggaatggtcacgatctcaccgcttatttccctgaaatcacgaattggtgt
aagcaacatcatgacctatacgagagtaatctcccgttattgttagatggtgaaatcgtt
caattactcacttcataccgttgtaactttagtcaaatccaaagaaggtcgaagtcaaag
cgaaatgcaaagaatcaacttcaggtaacatttattgttttcgatctactacaaggtggg
gagacaaatttccgtaataaaccattcatcgaaagagatcaagcactggataacttattt
acgaaaaagaccggaacgatatacaaagcacctacttttgaactggtagaagatgtgaag
aaattggttgatttacaccaggcggagggatttgtagctaagaaaaaaaacgccccctat
aaagaaggaaagcgtagtgattcctggttgaaaataaagaactatcgtactattcaagga
attgtaacaaaatggaatagtgataatgactattttacgattagttattatgcggacaat
aaactgcaattgttaggcaagtgtaaaaacgggttgaagaatgatgaaaaagaaacacta
cagacatttataaaaaagaatggtaaaaaagtaaacggaacgacttggaatgtagcgcca
tctgtctgcttgaatattgactgtctggacgttagcaatcatgaattgcgtgaaccacat
tttgcagcgttccgtttcgatatcgaaccagcagattgtactaaagacgcggttcagctt
ggattagcgcaaattccagaatgtatctccgtttcaagattagaaaaattgctatttccc
aattactctaaattagaatatttgtgttatttaagaacaatggcgccgtacatgcttcct
tggataatggatcggaaattaacgattattcgctatcctgatggcgtagatgcgccatca
ttctatcaaaaacatttaccagattatgcacctgcttttctcagacctatgctatcaacc
gacgaagaagcagctatatatatacagaactttgaaagtctgctttggtttggcaaccat
gctggcttggaatttcatatgccatttaacaagcagcaccatcaagagccggatcaaatt
gtctttgatttagatccacccagccttaaagaattctaccttgctgttcgggctgcatca
ttaattaaagaaatgatggagaaccaaaaattaaaaccatatatcaagacctcgggaagg
accggactgcaaattcatataccgattaataattggacgtaccaggatacacgtgagtta
atggaagctacagctaacgtattaattcaagcgtatccggatcagtttaccagcgaaagg
ctgataaagaatcgcggcaatcggttgtatattgattatgtccagcacgcggaaggaaaa
accattattgctccttactccacgcgtgcaacgaaacaagcaactgtagctactccttta
ttctgggaagaagttaacgaaaccctggatccaaccagtttcactattcgttcagtattg
aaaagaattaaggacaaaggatgcccattctttgatttttatacacatttcgaaaagcag
gagtaa
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