Gracilibacillus salinarum: MUN87_13980
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Entry
MUN87_13980 CDS
T09433
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gsm
Gracilibacillus salinarum
Pathway
gsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUN87_13980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsm03400
]
MUN87_13980 (mfd)
Enzymes [BR:
gsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUN87_13980 (mfd)
DNA repair and recombination proteins [BR:
gsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUN87_13980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UOQ83853
LinkDB
All DBs
Position
3007704..3011237
Genome browser
AA seq
1177 aa
AA seq
DB search
MYELKQYLQDRDDFYSIIDGVQSGLKEQLVSGLSGSAKSMFAGLIQESTQKKSIIITHQL
SQAQQLYEDLQEFSTDEHIYLYPVNELLASELAVASPELLSQRILALNNWLNQDNGILIA
PVAALKRMLPPMAYWQEYQLDVALDQVIDIDQTLTTLIEMGYVRQDMTASPGEFSLRGGI
LDIYPITEDQPIRIELFDDEIDSIRYYDAESQRSLEKQDSMRIYPTTELLLKEHDLVAAA
QKLEESLHDTMKKIKNKSDQQILTESITADIERLNHCERFQEMRKYVSFFYEQNYSLLDY
LPEDGFVILDEMSRIQETAVHLDNEEQEWLKDNLQRGKAVRDLQLSFDWHDAWQRMKQQR
LYLSVFLRHIPNTNPANIVNLSCRAMQQFHGQMNLLQNEMERWHKADYSVIILAPNRSRM
EKIQSVLEDYQMNAVISEELPALPVSQPVITIGNVSGGFELPMHKLAVITENELFKQKTT
RKKRKQKISNAERIKSYQELQVGDYVVHTNHGIGRYIGIETLAVNGLHKDFMLLKYSGDD
KLFVPIDQIDLVQKYVGSEGKEPKLYRLGGNDWNKVKRKVQSKVEDIADDLMKLYAEREA
AKGFAFSPDTEMQRDFEASFPYQETEDQIRCIEEIKEDMEKERPMDRLLCGDVGYGKTEV
AIRAAFKAITEGKQVAILVPTTILAQQHYETVLERFQDYPINIGLLSRFRTRKQQTETLK
GLKNGTIDIVIGTHRLLSKDVVYKELGLLVVDEEQRFGVKHKEKIKQLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNAPLVREAIERELSRGGQVFFLYN
RVESIDKVAQDIQMLVEDARVTVAHGQMNESELENVMFSFLEGEADVLVSTTIIETGVDI
PNVNTLIVNDADKMGLSQLYQLRGRVGRSNRVAYAYFTYQQDKILTEVSEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDMYSQMLNEAVEAKKQGKAVEDVQP
FEVDLDLKVDAYIPDQYIPDEKQKIDMYKRFQAIYSQEDIHDLRDELIDRFGDYPEEVAN
LFHVSTLKMMAKREKIEAITERKQKIEVLVDGDRSQEIDGAKLFEFANQYGRQIQLGTED
RKLKVTFRFEPSQHFKRYELLEEFIQTLTEMKQTPVA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaactaaagcaatatcttcaagaccgcgatgatttctattcgattattgatggg
gttcaatccggtttaaaagaacaacttgtatctggtttatcgggttccgcaaaaagtatg
tttgctggattaatccaggaatcaacgcaaaagaagtccatcattattacgcatcaatta
tcacaggcacagcagttatatgaggacctccaggaattttcaactgatgaacacatctat
ttatatcctgtaaacgagttgttggcttctgaattagcggtggcaagcccagagttatta
agtcagcgaatcctcgctttgaataattggctgaaccaagataatggcatattaattgca
cctgtagctgctttgaagcggatgttaccgccgatggcatattggcaagaataccagctg
gatgttgcccttgatcaagtaattgatatcgatcagacactaaccacgttaattgaaatg
ggttatgtcaggcaggatatgaccgcgagtcctggagagttcagtttgcgtggtggtatt
ttagatatttatccaattaccgaagatcagccaatccgtatcgagttatttgatgatgaa
attgactctattcgctattatgatgcggaatcgcaacggtcattagagaagcaggacagc
atgaggatctatcctacaacggaattgttgctgaaggaacatgatcttgttgcagcggca
cagaagctagaagaatcccttcatgacacaatgaaaaaaatcaaaaacaaatcagatcag
caaatattgacggagtcgataacggctgacatagaacgattaaaccattgtgagcgtttt
caggaaatgagaaaatacgtctcctttttctatgaacaaaactatagtttactagactat
ttaccagaagatggttttgttatcttggatgaaatgagcagaatccaggaaacagccgta
cacctcgacaatgaagagcaagaatggctgaaagataatctccaaagaggaaaagctgtt
cgggatttacaattgtcgtttgactggcatgatgcatggcaacggatgaaacaacagcgt
ttgtacctctctgttttcttgcgtcacataccgaacaccaatccggcaaatattgtgaac
ttatcttgccgtgctatgcaacaatttcatgggcaaatgaatctgttacaaaatgaaatg
gagcgttggcataaggcggattactcggttattattctggcaccaaatcgcagcagaatg
gaaaaaattcagtccgtactggaagattaccaaatgaatgctgtgatcagtgaagaatta
ccagcattgcctgtttcacagcctgtgattacgattggcaacgttagtggtggttttgag
ttacccatgcataaattggcggtcatcactgagaatgaattatttaaacaaaaaacaaca
cgaaaaaaacgaaaacaaaaaatatcgaatgcagaacggatcaaaagttatcaggagtta
caagttggcgattacgttgtgcataccaatcatggtattggccgctatattggtattgaa
acattagcagtgaacggattgcataaagattttatgctgcttaaatattcaggtgacgat
aaactatttgtacctatcgatcagattgatctggttcagaaatatgttggttctgaaggt
aaggagccgaagttataccgcttgggtggtaacgactggaataaagtcaaacgaaaagtg
caatccaaagtagaagatattgcagatgacctgatgaagttatatgcagaaagagaagct
gccaaaggctttgctttttctccagatacggaaatgcaacgtgactttgaagcttctttc
ccgtatcaggaaacagaggatcaaatacgttgtatcgaagaaatcaaagaagatatggag
aaagaacgacctatggatcgactgctttgtggggacgttgggtatggcaagacagaggtg
gcgattcgtgccgcgtttaaagcaataacagaaggcaaacaagtggcgatcctcgttcca
acgaccattttggcccaacagcactatgaaacagtattggaacgttttcaagattatcca
attaatataggtctgctcagccggttccgaacacgtaagcagcaaacggaaacgttgaaa
ggattaaaaaatggtaccatcgatattgtgattggtacacaccgtttattgtctaaagat
gtggtatataaagaattaggattactggttgttgatgaagagcaacgatttggtgtgaag
cataaggaaaaaattaaacaattaaaaacaaatgtcgatgttttaacgttaacagcgaca
cctattccacgtacattacacatgtcgatgcttggggtgcgtgatctgtctgtcattgaa
acaccaccggaaaatcgattcccaattcagacctatgtcatggaatacaatgcaccgtta
gtaagagaagcgattgagcgggaattgtcccgtggaggccaagtattctttttatacaat
cgtgttgaatcgattgataaggtcgcacaagatattcaaatgcttgtagaagatgctcgt
gtgacagttgcccatggacagatgaacgaatcggaattggagaatgttatgttttccttc
ttagaaggcgaagcagatgtgttagtaagtacgacgattattgaaacaggggtagatatc
ccgaatgtgaacacgttaattgttaatgacgcggataaaatggggctaagccaactctat
caattgcgtggacgagtaggtcgttccaatcgcgttgcctatgcgtatttcacctatcag
caggataaaattctaacagaagtgtcagagaaaaggttacaggctatcaaggaatttacc
gaattaggatctggatttaaaattgccatgcgtgatttatcgattcgaggtgctggaaat
atattaggtgcgcaacagcacggatttatcgattcagtaggttttgatatgtattctcaa
atgctgaatgaagcggtagaagcgaaaaaacaaggaaaagcagtggaagatgtgcaacca
tttgaagtcgatttagacttgaaagtcgatgcctatattccagatcaatatattcctgat
gagaaacaaaagattgatatgtataaacgtttccaagctatttattcacaagaagatatt
catgaccttcgtgatgaattaattgatcgttttggcgattatccagaagaggtggcaaac
ctattccatgtgtcgacgttaaaaatgatggccaaacgggaaaaaatcgaagctattacc
gaacgaaaacaaaaaattgaagtattggtggatggcgatagaagtcaggaaattgacgga
gccaaattatttgagtttgctaaccaatatggacgtcaaattcaactcggcaccgaagac
cgtaaattaaaggtcactttccggtttgaaccatctcaacatttcaagcgttatgagctg
ttagaggaatttatccagaccttaaccgagatgaaacaaacgccagttgcctaa
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