Gracilibacillus salinarum: MUN87_18410
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Entry
MUN87_18410 CDS
T09433
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gsm
Gracilibacillus salinarum
Brite
KEGG Orthology (KO) [BR:
gsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gsm03009
]
MUN87_18410 (rlmD)
Enzymes [BR:
gsm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MUN87_18410 (rlmD)
Ribosome biogenesis [BR:
gsm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MUN87_18410 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
MTS
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_25
PrmA
N6_N4_Mtase
Methyltransf_4
PCMT
Methyltransf_32
Saf-Nte_pilin
Methyltr_RsmB-F
UPF0020
Ubie_methyltran
RNA12
AAA_34
Motif
Other DBs
NCBI-ProteinID:
UOQ84612
LinkDB
All DBs
Position
3910059..3911552
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AA seq
497 aa
AA seq
DB search
MNKSKKNGHKPGKTRNQSKKTNGKKRSALTNQKGDKFQGKPSTTNKRRGNKKSLTAEVTC
TGLTNEGKGIVQWKGKQLEVEHLLPGETAEITLSTSGRNVHTELKRIITLSQDRVEPMCT
YFYECGGCQLQHMHEQAQEDFKQETIDKLMKPFGKPEPILTMDHPYDYRNKSHTTFGLNK
ERQIIGGLYAQNSHKLISMDRCLIHDPKADEIWQTIKDMMKSFKMQPYNEDTGRGFLRHV
LVKVGKVSGEIMVVLVVASPIFKGKNNFVKALRKAHPEITTILMNVNNRNTSMVLGDQEK
VLFGKGTITDTLCGLKFDISAKSFYQINPVQTEKLYAKAIEMAQLTGSETVIDAYCGIGT
IGLISSQKAGKVIGVELNKDAVRDAIRNSKRNGVKNARFYQGDSGEFMMEMAARGEKADV
VIMDPPRSGSDEAFLSSVVKLKPKRIVYVSCNPVTQVRDMSYLVQNGYKVTGMQPVDMFP
QTVHVECVASIELKLSN
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagcaaaaagaatggacataaaccgggaaaaacacgcaatcagtcgaaaaaa
acaaatggaaaaaagcgctccgcactgactaatcaaaagggcgacaaattccaaggtaag
ccctcgacaacaaataagcgtcgaggtaataagaaatctttaaccgcagaagtgacctgc
acaggcctgaccaatgaagggaaaggcatcgttcagtggaaaggaaaacagctggaggta
gagcatctattgccaggtgaaacggctgagattacgttgtccactagtgggcggaatgtt
catacggaattgaagcggataatcaccttgtctcaagaccgagtcgagccaatgtgcacc
tatttttatgagtgtggcggatgtcagctgcagcatatgcacgagcaggctcaggaagat
ttcaagcaagaaacaatagataaattgatgaaaccattcggtaaaccggaacccatttta
acgatggaccatccgtatgattaccggaacaagagccatacaacatttggtctgaataag
gaaaggcagattattggtgggctatatgctcagaatagtcataagcttatctcgatggat
cggtgtcttattcatgatccgaaagcggatgagatctggcaaacgattaaggacatgatg
aagtcctttaaaatgcaaccatataatgaagacactggacgaggtttcctgcgtcacgta
ctggtgaaggtcggcaaggtcagtggtgagattatggtggtgctggttgtagcttcacct
atttttaaaggcaagaataattttgtgaaagctctcaggaaggctcacccagagattacg
accatcctcatgaacgttaataatcggaatacgagcatggttctaggtgatcaggaaaaa
gtattgttcggtaaagggacgataacagacaccctttgtggattgaagtttgatatttcc
gcgaaatccttctatcagattaatccggtccagacggaaaagttatatgcgaaagccatt
gaaatggcccagttgactggaagtgaaaccgtcattgatgcatactgtgggatcggtaca
attggactgatttctagtcaaaaggctggcaaagtcattggggtagaattgaataaggat
gctgttcgagacgcaattcgcaattcaaagcgcaacggcgtgaaaaatgcccgattctat
caaggcgattccggggaattcatgatggagatggcagcacgtggagagaaagcagatgta
gtaattatggatccaccacgaagcggaagtgatgaagcattcttgtctagtgttgttaag
cttaagccgaaacgtatcgtttatgtgtcctgcaatccggtgacacaggtgcgggatatg
agctatttagtacagaacggatataaggtaacaggaatgcagccagtggatatgtttcca
cagacggtgcatgtggagtgtgtcgcgtcgatagagttaaaattgtctaattaa
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