Gynuella sunshinyii: YC6258_00434
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Entry
YC6258_00434 CDS
T03690
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gsn
Gynuella sunshinyii
Pathway
gsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YC6258_00434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsn03019
]
YC6258_00434
03009 Ribosome biogenesis [BR:
gsn03009
]
YC6258_00434
Enzymes [BR:
gsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YC6258_00434
Messenger RNA biogenesis [BR:
gsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YC6258_00434
Ribosome biogenesis [BR:
gsn03009
]
Prokaryotic type
rRNA helicases
YC6258_00434
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJQ92484
UniProt:
A0A0C5VQC4
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All DBs
Position
complement(390524..392254)
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AA seq
576 aa
AA seq
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MTDSEHITSFADLQLSEPVMKALSAIGYESPSPIQSQTIPSLMSGRDLLGIAQTGTGKTA
AFALPVLHNLDIQQVSPQALVLAPTRELAIQVAEAFQSYAHFIKGFHVLPIYGGQDMRVQ
LRALKRPVHVVVGTPGRVMDHLRKGSLDLSHLKTVVLDEADEMLRMGFIEDVEWILEHTP
KERQVALFSATMPEPIRKVTANYLKDPVEVRVARESTTVAQIEQCHLMVQPNRKLDALTR
VMEVEDFDAAIVFVRTKTATTELAEKLEARGFSSAALNGDMNQAQREKTIERLKKGKLDV
AIATDVAARGLDVERISHVINYDIPYDSEAYVHRIGRTGRAGRSGKAILLITPREQRLLR
TIEQHTRAPIPVMKLPTAEQLSEQRIKEFKDTVLAVVQDIDGTPDKDILVDLIMGLHQEH
QIEPINIAAALGYIAQQGTPLLVGELSNDFIVQPRGRQDDRRDDRREKSGGKSGERKSRS
LPDGMKVQKYRLDVGRRDGIRPGDIVGAIANEAGIESQFIGNIRLSENFSIVELPDGMPK
EVFKQLKNVKVRNRPLNIRPWEDEKPSKSRHRAKKG
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattccgaacacattacttcttttgccgatttacagctttccgagcctgtgatg
aaagcgctatcggcgatcgggtatgaaagtccgtcccctatacagtcgcaaaccatccct
tcgctgatgagtggtcgcgatctgctgggtattgcccagaccggtaccggcaaaaccgcg
gcgtttgcattgcccgtacttcataatctggatattcaacaagtttctccacaggcactg
gtgctggcccccacacgggaattggctattcaggtggctgaagcattccaatcttatgct
cattttatcaagggttttcatgtactgccgatttatggtgggcaggatatgcgcgtacag
ctgcgggccctgaaacgtccggtgcatgtggtcgttggtacgcctggaagggtgatggat
catttacggaaaggcagtctggatttgtcgcaccttaaaacagtagttctggatgaagct
gatgaaatgctgcgcatgggctttattgaggatgttgagtggattctggagcatacccct
aaagaacggcaggttgctttgttttcggctaccatgccggaacctattcgtaaggtcacc
gccaattacctgaaagatccggttgaagtcagagtcgcgcgcgagtccactaccgttgcg
cagatcgaacaatgtcacctgatggttcagccaaaccgaaaactggatgctctgaccagg
gtaatggaagttgaggattttgatgccgccatcgtgtttgtacggaccaaaaccgccacc
actgaactggcggaaaaactggaagcacgtggcttttccagtgctgcgctgaacggtgat
atgaatcaggcacagcgtgagaaaactattgagagactcaaaaaaggcaagctggatgtc
gctattgccacggatgtggctgctcgtggtcttgatgtagagcgcatcagtcacgtaatc
aattatgatattccctacgattccgaagcttatgttcatcgtatcggtcgtacagggcgt
gccggccgcagtggtaaagctattctgttgattacccctcgtgaacagcgtctgctcaga
accatcgagcagcatacccgggccccaattccggttatgaagttgccaacggctgagcaa
ttgagtgagcaacggatcaaagagtttaaagataccgttctggcggtggttcaggatatc
gatggaacgcctgataaggacattctggtggatttgattatgggactgcatcaggagcac
cagatagaaccaatcaatattgccgctgcgttaggatatattgcccaacagggaacgcct
ttgctcgtaggtgagctcagcaatgactttattgttcagccccgaggtcggcaagacgac
cgtcgtgatgatcgccgtgaaaagagtggtggtaaatctggggaacgcaaatcacgtagt
ttgccggatggtatgaaagtacagaaatatcgcctcgacgttggtcgccgcgatggtatc
agacctggtgacattgtgggcgctattgccaatgaagccggtattgaaagccagtttatc
ggcaacattcgtctcagtgaaaatttctccattgtcgaattgccagacggaatgccaaaa
gaagtatttaaacagttgaaaaacgtcaaagtgcgtaatcggccattaaatattcgtcca
tgggaagatgaaaagccgtccaagtctcgccatcgggctaaaaaaggctga
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