Gynuella sunshinyii: YC6258_00794
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Entry
YC6258_00794 CDS
T03690
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gsn
Gynuella sunshinyii
Pathway
gsn00040
Pentose and glucuronate interconversions
gsn01100
Metabolic pathways
gsn02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
YC6258_00794
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
YC6258_00794
Enzymes [BR:
gsn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
YC6258_00794
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GFIT
Motif
Pfam:
Pectate_lyase_4
CBM_6
CBM_35
CBM_35_2
CBM13-like
Endotoxin_C
DUF7383
Motif
Other DBs
NCBI-ProteinID:
AJQ92844
UniProt:
A0A0C5VRG4
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All DBs
Position
782069..784204
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AA seq
711 aa
AA seq
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MIKPLLFISGVLLLTACGGEETSIKISTTDKHDTESSIDNTNSTPSTDADIDTADNSGSN
VTESLIIQENEDGFCGLDGQIEKEHTGFTSMGYANTDNINGAEIRWSVNASEAGSYAVKI
RYANRNNEARPGNFWVNGTVVSLLDIGTTGDWSQYVDSGEVSLSLNKGNNSITLKATTEG
GLPNVDYIQILSSTVSPGNCSGSDAEDNQNDNNNPDDGSSGSDDTGNNGDGDQETPSVTA
GCEELIKNPAINWRESALQSDQEIVACLSESLGRPVGFGENTTGGYDANGSSHLVVIHKN
TSETVEQQLFNAISSSDYNWIVFDKRDFAEETDISLHRLFCSDNAVLAALDNASEAECQN
PKLWCENHNVSTDNCLATFYNDRLNDASLPIRNRMIDSNTTIDGRGANAYMLFNGFSIGS
DSKGTSTHISENVIITNMEFRGAGHTEDHNLDPDMIRSTGESHNIWIHQNTFDTTGDSAW
DIKVGAYDITLSFNKLIDVKRAGLMGSSDSRTINEQIKATMHNNLFVTLDQYYSDKKFDT
LRRVPLMRRGQAHMFNNVFYGYRKDILSVRVGGRILFENNMVLNNAAEAAAKKDDMSYFI
NTLMRDFREGGLEIRDSSVWFSDASCQLQGEPGDLTASHGSTPEMAQSYSARSQEVIQNN
QFSVGQDLADYLYATTGKGGEIPYLSPYAQDRYSVISLAPETCQQESKAGH
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaacctttgttatttatctccggtgtgttgctgttaacggcatgtggtggagaa
gaaacatccataaaaatttcaaccaccgacaaacatgatactgaatcaagtatcgataat
accaattccactccatcaaccgacgctgacatcgacaccgcagataattccggtagcaac
gtaactgagagtcttattatccaggaaaacgaagatggtttttgtggcctggatggacag
atagaaaaagaacataccggctttaccagtatggggtatgccaataccgataatataaac
ggcgccgaaattcgttggtctgtgaacgccagtgaagccggtagctatgcggtaaaaatc
cggtatgccaatcgtaataatgaagcgcgtccaggtaatttctgggtgaatggcacggtg
gtcagtttattggatattggaaccactggcgattggagccaatacgttgactccggcgag
gtttctttgtctctgaacaaaggcaacaactccattactttaaaagcaacaacagagggt
ggtttgccaaatgttgattatattcagatactgagttcgaccgtttcaccaggtaattgt
tctggttctgatgccgaagataatcaaaatgataacaataacccggacgatggcagcagt
ggaagcgatgatacgggcaataacggcgatggtgatcaggaaacaccttccgtgaccgcc
gggtgtgaagagcttatcaaaaatcccgcgattaactggcgggaatcagcgttgcaatct
gatcaggaaatagtcgcctgcttgtctgaaagccttgggcggcctgtaggttttggcgaa
aacaccactggcggttatgatgctaatggaagtagtcatctggttgtcattcacaaaaat
acatcggagacagttgaacaacagctgttcaatgccatcagcagttcagactataactgg
atagtatttgataagcgtgattttgctgaagaaacagatatttccctgcatcgtctgttt
tgctctgacaatgccgtactggccgcacttgacaatgcctctgaagcagagtgccagaac
ccgaaactgtggtgtgaaaatcataacgtttcaacggacaattgcctggcaacattttat
aacgaccgtttgaatgacgcatccttgcctattcgtaatcgcatgattgactccaatacc
actatcgatggtcgtggcgccaatgcgtatatgttgtttaacggtttttcgattggtagc
gacagtaaagggacatcaactcatatatccgaaaatgtgatcatcaccaatatggaattt
cgcggtgccggtcatactgaagaccacaacctcgaccccgatatgatccgttctactggt
gagtcccataacatctggattcaccagaatacttttgataccacaggtgattcagcctgg
gatattaaagtcggggcgtatgacatcaccttatccttcaacaaactgatcgatgtaaag
cgtgccggactcatgggctccagtgacagccgaaccatcaatgaacagataaaagctacc
atgcataacaacctgtttgtgacccttgatcagtattacagcgataagaagttcgatacg
ttacgccgggtgccactgatgcgcagaggtcaggcgcatatgtttaataacgttttctac
ggctaccgcaaagatattctcagtgtacgggtaggaggacgtattctgttcgaaaataac
atggtgctgaacaatgctgctgaagctgcggcaaaaaaagatgatatgtcctacttcatc
aacaccctgatgcgcgactttcgcgaaggtggactggaaatccgcgacagttcagtctgg
ttctccgacgcaagctgccaactgcagggagagcccggtgacctgacagcctctcatggc
agcacccccgaaatggcacaaagttacagtgcacgctcccaggaagttattcaaaataac
cagttcagtgttggtcaggacttggccgattatctgtatgctaccaccggtaaaggtgga
gaaattccatatctatcaccttatgcccaggatcgttacagcgttatcagtttggcaccg
gagacctgccaacaggaaagcaaagcagggcactga
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