Gynuella sunshinyii: YC6258_03328
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Entry
YC6258_03328 CDS
T03690
Name
(GenBank) topoisomerase IA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gsn
Gynuella sunshinyii
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsn03032
]
YC6258_03328
03400 DNA repair and recombination proteins [BR:
gsn03400
]
YC6258_03328
Enzymes [BR:
gsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
YC6258_03328
DNA replication proteins [BR:
gsn03032
]
Prokaryotic type
DNA Topoisomerases
YC6258_03328
DNA repair and recombination proteins [BR:
gsn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
YC6258_03328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AJQ95364
UniProt:
A0A0C5VYA3
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Position
3439187..3441808
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AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKEYVVKSSIGHIRDLPVGGQASKTDPKERAKAAAATRK
MSPEEKEKHRRQKTKEQLFTRMGVNPENNWAAQYQVLPGKEKVVDELKRLAKDADTIYLA
TDLDREGEAIAWHLRESIGGSEDKYKRVVFNEITKNAIKDAFSAPGSLDIDRVNAQQARR
FLDRVVGFMVSPLLWSKVARGLSAGRVQSVAVRLIVEREREIRAFTPEEFWQLFANTQLP
GKKDELRLEVVKHAGESYRPTNKADSDRMVALLEGVPISVADREDKPTSSKPSAPFITST
LQQAASTRLGFSVKKTMMLAQRLYEAGYITYMRTDSTNLSQDAITAVRDYIEGNYGDQYL
PKSPVQYGSSASAQEAHEAIRPSDVNVSSTQLSNMERDAERLYELIWRRFVACQMTPAKY
KSSTITARAGEFELKTKGRILVFDGYTKVLSQSLKKEEDIVLPDVQVGDDLKLLSLDPSQ
HFTKPAPRYSEAALVKELEKRGIGRPSTYASIISTIQERGYVSMRNKRFYAEKMGDIVTD
RLVENFNDLLDYNFTANMEQTLDAIAEGDRNWIETLNSFYAGFTQQLDHAEAGMRPNQAV
ETDIDCPTCGRKMAIRNGSTGVFLGCTGYNLPPKERCKTTINLISGDEVVDADADDEAES
KALRAKKRCPVCDTAMESFLLDEHRKIHICGNNPDCHGYEIEQGEYKIKGYDGPVLECDR
CGSEMQLKNGRFGKYFGCMNDECKNTRKLLKNGEPAPPKVDPIPMPELKCQKVDDTYVLR
DGASGLFLAASQFPKNRETRAPQVQELIPHKSEIDPKYQYLLSAPTHDPDGNPAIIRFSR
KNKEQYVMSEVEGKATGWKAFYRNDKWQVDGQK
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctggttatcgttgagtcgcctgcgaaagctaaaacaatcaataaatat
cttggaaaagagtacgtcgttaagagttccattggtcatatccgagatctccccgttggt
ggtcaggcaagcaagactgatcccaaagagcgtgccaaagctgcggcagcgacccgcaag
atgagccccgaggaaaaggaaaaacatcgccgtcagaagaccaaagaacagttgtttacc
agaatgggtgtgaacccggagaacaactgggcggcgcagtaccaggtattgccaggcaaa
gagaaagttgttgatgagcttaagcgtcttgccaaagatgcggacactatttatctcgcg
acggacttggatagagaaggggaggcaattgcctggcaccttcgtgagtctattggtgga
agcgaagataagtataagcgagtggtatttaacgagattaccaagaatgccattaaagat
gcgttctcggcgccaggttcgttggatattgaccgtgtaaatgcccaacaggcccgccgc
tttttggatcgtgttgtgggatttatggtctcgccattgctttggagcaaagttgccaga
ggtttgtctgcgggtcgtgttcagtctgtggcggtgcggctgattgttgagcgggagcgg
gagatccgggcatttaccccggaagagttttggcaactgtttgccaatacccagttgcct
ggaaaaaaagatgagctgcgtctggaagtggttaagcatgcgggcgaaagctatcgtcct
acgaataaggcggacagcgatcgcatggtggctctgttggaaggggtgccgatttcagtt
gcagatcgtgaggataagcctacctccagcaaaccaagtgcaccatttattacatctacc
ttgcagcaggctgccagtactcggctgggtttcagtgtcaagaaaaccatgatgctggca
cagcgcttatatgaagcgggttatattacgtacatgcggacggactctactaatctgagt
caggatgccataacggcggtaagagattatatcgaaggtaactatggtgaccagtacctt
cccaagagtcctgttcagtatggtagttctgcgagtgcacaagaggctcacgaggctatt
cgtccatctgatgtcaatgtgtcctcaacccagctgtcgaatatggaacgcgatgccgaa
cgcctctatgaacttatatggagacgtttcgttgcgtgccagatgacgccagctaaatat
aaaagctctaccatcactgccagggcaggagagtttgaactcaagaccaaaggccgaatt
ctggtgtttgacggttataccaaggttttgagtcagtctctgaaaaaagaggaagacatt
gttttgcctgatgtgcaggtaggtgatgatttaaaactattgtctctggatccctctcag
cactttaccaagcctgcgccaagatattctgaagcggctttggtaaaagagttggagaaa
cgggggatcggcagaccgtctacctatgcgtccattatttcgactattcaggagcggggt
tacgtatccatgcgtaacaagcgcttctatgcagaaaaaatgggcgatattgtcactgat
cgcttggtcgagaattttaacgatctgttggattataacttcacagccaacatggagcag
acgctggatgccattgccgaaggtgatcgtaattggattgagacgttaaatagcttttat
gcaggctttacccaacagttagatcatgctgaagcgggaatgcgaccaaatcaggcggta
gaaaccgacattgattgcccgacatgtggacgcaagatggccattcggaatgggagtacg
ggggtgtttttgggttgtaccggttacaaccttccgccgaaggagcgctgtaaaaccact
attaacctgatatctggtgatgaagtggtggatgccgatgcggatgatgaagctgaaagt
aaagcgttaagagccaaaaaaagatgtcctgtctgtgatacagcgatggaaagctttctt
ttggatgagcatcgaaaaatccatatatgcggaaataaccctgattgccatggttacgaa
atcgagcagggtgagtacaaaattaaagggtatgatggtccggtgcttgaatgcgatcgc
tgtggttctgaaatgcagctgaaaaatggtcggtttggcaagtattttgggtgtatgaat
gacgagtgtaaaaatactcgtaagttgctgaaaaatggtgagcctgctccgccaaaagtg
gatccgattccgatgccggaacttaaatgtcagaaggtggatgacacttatgttcttcgg
gatggcgcttcaggtttatttttggccgctagccagtttcccaagaatcgtgaaacccgc
gcgcctcaggttcaggagctgattcctcataaatcggaaatagatccgaaatatcaatac
ctgttatctgcgccgacgcatgatcctgatggaaaccctgcgatcattcgcttcagtcgt
aagaataaagagcagtacgttatgagcgaagtggaaggtaaggcgacaggttggaaagct
ttttaccgaaatgacaagtggcaggtggacggtcagaaataa
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