Gynuella sunshinyii: YC6258_04000
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Entry
YC6258_04000 CDS
T03690
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gsn
Gynuella sunshinyii
Pathway
gsn00040
Pentose and glucuronate interconversions
gsn01100
Metabolic pathways
gsn02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
YC6258_04000
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
YC6258_04000
Enzymes [BR:
gsn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
YC6258_04000
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GFIT
Motif
Pfam:
Pectate_lyase_4
FGE-sulfatase
Motif
Other DBs
NCBI-ProteinID:
AJQ96036
UniProt:
A0A0C5VP24
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Position
4321987..4323480
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AA seq
497 aa
AA seq
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MLNKKRAFLSTTLGLAGTLGIASPVFAATLEGYATLNGGTTGGKGGNVVYASTGTQINQA
MCDRASTETPLIIYVSGTINHGNTSKVSGNCDTTSDSIQFKKVKNISLIGTGSGAVFDQI
GIHIREASNIIIQNINVKNVKKSGSPISNGGDAIGMEKNVYNIWIDHNTLEASGGESSGY
DALLDMKSTTQYVTVSYNKFYKSGRGGLIGSSDSDAYNTYVTFHHNWYDQVDSRMPLLRH
GTAHAYNNYYTNVSKSAMNPRIGGSIKAENNHFNGVNNPIGTFYTNDMGYWDLSGNIFEN
VTWNETADEHPAGPNPSSTTSVTIPYSYRLDGANCVKNVVTNAAGANKGLKESNGSCSTS
GGDNGGDNGGSNGDNLGTNLSIGAGSDGSSKGAGSYGDVRDGDTSTYWSPNGTTGRISIK
WSGSKTVNTVVIREPSGFQGRIGSWTLVNHDTGATLKSGNGAGTIKFSTTSLTKLDFNIT
SASGTPAVAEFETYNAQ
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgttgaataaaaaacgagcttttctgagcacaacacttggcctggcaggcactttgggg
atagccagcccggttttcgcagcaacattggagggatatgcgacacttaatggaggaacc
acgggcggaaagggaggcaacgtggtgtatgcctcaacaggcacccaaatcaaccaggcc
atgtgtgaccgggcatcgactgaaactccactgatcatttatgtcagcggcactatcaat
catggtaataccagcaaagtatccggtaattgcgataccaccagtgattctattcaattt
aaaaaagtcaaaaacatctctctgatcggaaccggaagcggtgcggtattcgaccagatt
ggcattcacattcgcgaagcctccaacatcattattcagaacattaatgttaaaaacgtt
aagaaatccggctctccaatttccaatggtggtgatgccatcggcatggaaaaaaacgtt
tacaacatctggatcgaccataacacccttgaggcttccggtggcgaaagcagtggttac
gatgccctgctggacatgaaaagcaccactcaatatgtcaccgtttcctacaacaagttt
tataaatcaggccggggtggactgataggctccagtgacagcgacgcctacaacacctac
gtaacgttccaccataactggtatgaccaagtggattcccgtatgccacttttgagacac
ggtacagcccacgcatataacaactactataccaatgtttccaaatcagcaatgaaccct
cgcatcggtggttccatcaaggcggaaaataaccacttcaatggtgtaaacaacccgatc
ggcacattctataccaatgatatgggatactgggatttgagcggaaatatctttgagaac
gtcacctggaacgagacagccgacgaacacccagcaggtccaaatccatcttccacaaca
agtgtcactattccttacagctaccgtcttgatggtgccaactgtgttaaaaatgtcgta
accaacgccgcaggtgccaacaaaggcctgaaagagtccaacggttcatgcagtacatcc
ggtggagacaatggtggtgataacggtggaagcaatggcgataacctgggaaccaacctg
tcgatcggtgccggctcagatggctccagtaaaggtgcaggcagctacggtgatgtgcgt
gacggcgacaccagcacttattggtcaccaaatggcaccaccgggcgaatctcaatcaaa
tggagtggcagcaaaactgtgaacacagtcgttattcgtgagccttccggattccagggt
cgtatcggctcctggactctggttaaccacgacactggcgcaacactgaaatcaggaaat
ggcgctggcacgatcaagttcagtaccaccagcctgaccaaactggatttcaatatcacc
agcgcttccggtactccggctgtcgctgaatttgaaacctataacgctcagtaa
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