Gynuella sunshinyii: YC6258_04153
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Entry
YC6258_04153 CDS
T03690
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gsn
Gynuella sunshinyii
Pathway
gsn03410
Base excision repair
gsn03430
Mismatch repair
gsn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YC6258_04153
03430 Mismatch repair
YC6258_04153
03440 Homologous recombination
YC6258_04153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsn03400
]
YC6258_04153
DNA repair and recombination proteins [BR:
gsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
YC6258_04153
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
YC6258_04153
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YC6258_04153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AJQ96189
UniProt:
A0A0C5W0H4
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All DBs
Position
complement(4470468..4472216)
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AA seq
582 aa
AA seq
DB search
MTTIEKKIVRRTPLTELPDWDPAQPNILRTVYQNRGIADLQQLEKGTQQLLSYRQMKGIE
EAAALMVRHIQRQSNIVVVGDFDADGATSTALSVLVLKAFGASNVRYLVPNRFEFGYGLS
PEIVQVAHSMNPDLIMTVDNGISSIEGVAAARSLGMDVLVTDHHLQGAELPDANAIVNPN
QHGCPFPSKATCGCGVAFYLLAAVKAGLKQAGWFEEQGIREPNLADYLDIVALATVADVV
PLDQNNRIFVHQGLARIRAGKARPGILALLEVAGRNYQQVVAADMGFAVGPRLNAAGRLD
DMSLGIECLLAEDPYRARELAVLLNDMNIDRRAIEQSMQKEALRFLEKFEANTDAEGLPW
GVCLYQPDWHEGVIGILASRIKDRVHRPTIAFAQAEDGNLKGSARSIPGFHIRDGLDAVA
KRYPEVLAKFGGHAMAAGMTVRAEHFERFQQAFDEEVRRQLEADQLIAQVATDGELGVSD
FNLDLADLLRNSGPWGQAFPEPCFDGYFNIVQQRIVGQKHLKLTLSPQGSDLLIDAIAFN
VDLNIWPTQAAKIQCAYKLDINEFRGNISLQLMLEYIQPVFS
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccattgaaaagaaaattgtacgtcgcacgccattgactgaactccctgactgg
gacccggctcaaccaaatatactgcggacggtttatcagaaccgtggcattgcggatctt
cagcaactggaaaaaggcactcagcagttactgagttaccggcaaatgaaaggcattgaa
gaggcggcggcgttgatggttcgtcatatccagcgccagagcaatattgtggtggtgggt
gattttgacgccgatggtgccacttcgacggcgttgtcggtactggtgcttaaagcattt
ggtgcgagcaatgttcgctatctggtgccgaaccggtttgaattcggatatggcctgagc
cctgagattgtccaggtggcacacagcatgaaccctgatctgattatgaccgtcgacaac
ggcatctccagtattgagggggtggctgccgcccgcagtttggggatggatgtgctggtg
accgatcatcacctgcagggggctgaactgcccgatgccaatgctattgtcaatccaaac
caacatggctgtccttttcccagtaaagccacttgcggctgcggagtagcgttttacctt
ctggcggcggttaaggccggattgaaacaagccggctggtttgaggagcagggtattcgc
gagcctaatctggcggattatctcgatattgttgcgcttgcgacggtggcagatgtggtg
cccctggatcagaacaaccggatttttgtgcaccagggtctcgcccgtatacgcgcaggg
aaggctcgtcccggtattctggccttacttgaagtggcaggtcgaaactatcagcaggtg
gtggctgctgatatgggatttgccgttggtccacgtttgaatgcggccggcagactggat
gacatgtcacttggcatcgaatgcctgctggctgaagatccttaccgtgcgcgtgagctc
gcagtattgctcaatgatatgaatattgaccggcgggccattgagcagagtatgcagaag
gaggcactgcggtttctggagaagtttgaagccaacaccgatgccgaagggctgccgtgg
ggggtatgtctttatcaacccgattggcatgaaggtgtgattggtattctggcctcgcga
atcaaagacagagtgcatcgaccaaccattgctttcgcccaggcagaagatggcaatctc
aaagggtcggcccgatcgatccccggttttcacatccgtgatggtcttgatgcggtcgcc
aagcgttatcctgaggtgttagcgaaattcggaggccatgccatggctgcaggcatgacc
gtacgggcagagcattttgaacgctttcagcaggcttttgacgaagaggttcgccggcaa
cttgaagctgatcagctgattgcccaagtcgccactgacggtgagttgggagtaagtgat
tttaacctggaccttgcggatttgttacgcaactccggtccctgggggcaggcatttccc
gaaccctgttttgatggttatttcaatattgttcagcaacgtattgtcggtcagaaacat
ttaaaactgacattatctccgcagggttctgatttattgattgatgcaattgcttttaat
gtggatttaaatatttggccgacccaggcagctaaaattcaatgtgcttataaattggat
attaatgaatttcggggaaatatatctttgcaattaatgctcgaatatattcaaccggtt
ttttcctga
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