Gynuella sunshinyii: YC6258_05242
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Entry
YC6258_05242 CDS
T03690
Name
(GenBank) polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gsn
Gynuella sunshinyii
Pathway
gsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YC6258_05242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsn03019
]
YC6258_05242
03016 Transfer RNA biogenesis [BR:
gsn03016
]
YC6258_05242
Enzymes [BR:
gsn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
YC6258_05242
Messenger RNA biogenesis [BR:
gsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YC6258_05242
Transfer RNA biogenesis [BR:
gsn03016
]
Prokaryotic type
tRNA degradation factors
YC6258_05242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
OB_RRP5_4th
aRib
S1_2
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AJQ97272
UniProt:
A0A0C5VRN0
LinkDB
All DBs
Position
complement(5663110..5665224)
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AA seq
704 aa
AA seq
DB search
MSFLTAKTKTFQYGIHTVTLETGKVARQATGAVIASMGESKVLATVVAAKEANPAQDFFP
LSVHYQEKYYAIGKIPGGYLKREGRPSEKETLVSRLIDRPIRPLFPKGFMNEVQVIINVI
SASAKEETDICAMLATSAALAVSGIPFNGPIGAARVSYSDDHGYILNPDVATAAASSLDM
VVAGTKDAVLMVESEAKELTEDQMLGAVLFAHMEMQPAIKGITEFASEAGKEKWDWQPEP
ENTALLETVSAACYDKIAAAYTIVEKAARYDQLTLLRNEAIETLSGEEEGQPSADDIKAI
FGKLEKKIVRRNVVEGKPRIDGRDNKTVRPIEVEVGVLPRAHGSALFTRGETQALVSCTL
GTKRDAKMEEDLTGLRDDYFMLHYNFPPFSVGECGRMGAVGRREVGHGRLARRGVQASMP
STDDFPYSVRVVSEITESNGSSSMASVCGSSLALMDAGVPVSVPVAGIAMGLVKESDGFA
VLTDILGDEDHLGDMDFKVAGSAKGVTALQMDIKIEGITEEIMEIALQQAHEARIHILGE
MSKVISAPRPELSPNAPANETVKIDAEKIRDVIGKGGATIRALTEETGTEIDIDDDGTIR
IYAPDGVAMKAAKDRILAITAEAEIGKIYKGTVARLADFGAFVTFLPGKDGLVHISQIAE
ERIKSVADVLKEGQEVVVKVLDIDNRGRIKLTMKEISDEEKASV
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtgagttttttaaccgcaaagactaaaacttttcaatatggcattcacaccgttactctt
gaaaccggcaaagtggcccgtcaggcaacaggtgctgtaattgcctcaatgggtgaatca
aaagtactggccactgttgtggcggcaaaagaagctaatccagcccaggacttcttccct
ctgtctgttcactatcaggaaaaatactacgccatcggcaagatccctggtggttacctg
aagcgtgaaggccgtccttctgagaaagaaacattggtatcccgtctgattgaccgtcct
attcgtccattgttccccaaagggtttatgaatgaagttcaggtgatcattaacgtaatt
tctgcatcggccaaagaagaaactgacatttgtgcaatgctggccacgtctgcagcactg
gctgtttccggtatcccgttcaatggccctattggcgcagcgcgagtcagttacagcgat
gatcacggttatattcttaaccctgatgttgctactgctgcagcgtcttcactggacatg
gtggttgccggtactaaagatgcggtactgatggttgaatcagaagccaaagaactgacc
gaagatcagatgctgggtgccgttctgtttgcacatatggagatgcagccagccattaaa
ggcattaccgaattcgccagcgaagccggtaaagaaaaatgggactggcagccagagccg
gaaaataccgctctgttggaaacagtatctgcagcctgctacgacaaaatcgcagctgct
tataccatcgttgaaaaagcggcccgttatgaccagctgacgttacttcgtaatgaagcg
attgaaactctgtccggtgaagaggaaggtcaaccttctgctgatgatatcaaagcgatc
tttggtaagctggaaaagaaaatcgtgcgtcgcaatgtggtcgaaggcaagccacgtatt
gatggccgtgataacaaaactgttcgtccgattgaggtggaagtgggggtgttgccacgc
gcgcatggttctgctttgttcacccgcggtgaaacccaggcgctggtaagctgtactctg
ggtaccaagcgtgatgccaaaatggaagaggacctgactggtctgcgtgatgactacttc
atgctgcactacaactttcctccgttcagtgtgggtgagtgcggtcgtatgggggccgta
ggccgccgtgaagtcggtcatggtcgtctggctcgccgtggtgttcaggcttccatgcca
agtactgatgacttcccttattccgtccgcgtggtttccgagattactgaatccaatggt
tcaagttccatggcttctgtttgtggttcttctctggctttgatggatgccggtgtgcct
gtatctgttccggttgcgggtatcgcgatgggtctggtcaaagagagtgatggttttgct
gtattgaccgatattctcggtgatgaggaccatctgggtgatatggacttcaaagtggcc
ggatccgctaaaggtgttactgcgctgcagatggacatcaaaattgaaggtattaccgaa
gaaatcatggaaattgcgttgcaacaggcacatgaggcccgtatccatattctgggtgag
atgagtaaggtcatttctgctccgcgtcctgagctgtcacctaatgcaccagccaatgaa
accgtcaaaatcgatgctgaaaaaatccgtgatgttatcggtaaaggcggtgcgaccatt
cgtgctctgacggaagaaaccggtactgaaattgatatcgatgatgacggtacgattcgt
atttatgcaccggatggtgttgccatgaaagcggcaaaagaccgtattctggcgattacc
gcagaagcggaaattggcaaaatctataaaggtactgtcgcacgattggccgattttggt
gcgtttgtgacattcctgcctggaaaggatggtctggttcacatctcccagattgcagag
gaacgtatcaagtctgtcgctgatgtcctgaaagaaggtcaggaagtcgttgtcaaagtg
ctcgatatcgataatcgtggtcgtattaaactgactatgaaagagatcagtgacgaggaa
aaagcctcggtataa
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