Gynuella sunshinyii: YC6258_05569
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Entry
YC6258_05569 CDS
T03690
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit/160 kD subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gsn
Gynuella sunshinyii
Pathway
gsn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YC6258_05569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsn03021
]
YC6258_05569
03400 DNA repair and recombination proteins [BR:
gsn03400
]
YC6258_05569
Enzymes [BR:
gsn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YC6258_05569
Transcription machinery [BR:
gsn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YC6258_05569
DNA repair and recombination proteins [BR:
gsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YC6258_05569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AJQ97597
UniProt:
A0A0C5VSD6
LinkDB
All DBs
Position
complement(6035165..6039364)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLGLLKSQSHSEEFDSIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELAAPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYYESFVVIDPGLTTLDKGQLLTDEEYYEAIEEFGDDFDARM
GAEAVQKLLEDIDLEEEIAQIREEIPSTNSETKIKKLSKRLKLLESFYRSGNSPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLELRGLATTIKAAKKMVEREESVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHIPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERVNALGEGMVFADPEEVERAYGAK
KVELHARIKCRISEVLIDEDGIKTYQRSIKETTVGRVILWGIVPKGMPYELVNQPMKKKA
ISRLLNEAYRMVGLKETVIFADQVMYMGFRQATRSGSSIGVNDFEIPAEKVEIIAKADAE
VSEIEEQYASGLVTQGEKYNKVVDIWSRANEQVARAMMQNLSKEKTYDKTGAELEQESFN
SVYMYADSGARGSPAQMRQLSGMRGLMAKPDGSIIENPIKANFREGLSVGEYFSSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTEEGVIMEPIIEGGDVVVGLGQQVL
GRTAANDVLMPGSDDVAIPAGTLIDEKWVRSIDEWGIDQIRVRSAISCETHYGVCAKCYG
RDLARGHLVNIGEAIGIMAAQSIGEPGTQLTMRTFHIGGAASRSAVADSVQVKHGGVANL
HNLKTVERDNGDLVAVSRSGVLAVADEHGRERERYKLPYGAVISVKSGTSVEAGEIVAKW
DPHTHPIVAETSGYVSFIGLEDGITVNSKVDELTGVTSTEVIHQKDRSAAGKDIRPLIKL
VDEDGVELTFGEAGQPAQYFLPDGALLNLSNGDRVKVGDVIARIPQETSGNKDITGGLPR
VADLFEARKPKESAILAEISGVFGFGKETKGKKRLQISPTEGEGYEELIPKWRHLNVFEG
EQVEKGEVISDGPMNPHDILRIRGVRELARYIVNEIQEVYRLQGVVINDKHIEVIIRQML
RKVIILDSGDTGFIKGDQVEYVSVLEENERIAAEGKQGAKYERVLLGITKASLATESFLS
AASFQETTRVLTEGAVSGKQDFLRGLKENVAVGRLIPAGTGLAYHSERKRKRAAKGGGER
FATATASEVEAALTEALNK
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgttaggtttgctgaaatcgcaatcacactctgaggagtttgactccatc
cgaatcggtttggcgtctccagatatgattcggtcatggtcttatggtgaagttaagaaa
ccagagactattaactatcgtacattcaagccagaacgtgatggtttgttttgtgctcgc
atatttggcccaattaaagattacgaatgtctttgtggaaaatataagcgactcaagcat
cgcggtgtcatctgtgaaaaatgtggtgttgaagtcacgcaaacgaaagtgcgtcgtgac
cgtatgggccatattgaacttgctgctccagttgcccacatatggtttttgaaatcattg
ccttcacgtattggtttgatgctggatatgacacttcgtgatattgagcggattctgtat
tacgaaagctttgtggtaattgatcccggtttgacgactctggataaggggcaattgctg
acagatgaagaatactacgaagcaatcgaagagtttggcgatgattttgatgcccgcatg
ggagctgaggcagttcaaaaactgctcgaagatatcgacctggaagaggaaatcgctcaa
atccgtgaggaaattccttctacaaattcagagacaaagattaaaaaattatccaagcgt
ttgaaactgcttgagagtttctatcgctcaggcaacagtccggaatggatggtaatgaca
gttcttcctgttttgccgccagatttgagaccgttggtgccgctggatggtggacgcttt
gcaacatccgacctcaacgatttgtaccgccgggttattaaccgtaataaccggttgaag
agacttttggagctttcggctcctgacattattgtgcgtaacgaaaagcggatgttacag
gaatccgttgacgccctattggataatggtcgtcgtggtagagcgatcactggctccaac
cgtcgcccattaaagtctttggcagacatgatcaaagggaagcaaggtcgtttccgtcag
aaccttttaggtaaacgggtcgactattctgggcgttcagtgatcgtggtagggccaaca
ttacggttgcatcagtgtgggctgcccaagaagatggctctcgaattgtttaagccattt
attttcagcaagcttgaattgagaggtttggcaacaaccatcaaagcagccaagaaaatg
gtagaacgtgaagagtctgtggtctgggatattctcgatgaggttatccgtgagcaccct
gtactattgaaccgggctccaacgcttcacagattgggtattcaggccttcgaacctgtc
ctaattgaaggtaaagctattcagctgcatccattggtttgtgctgcttataatgctgac
tttgatggcgaccagatggcggttcacattccgctgactttggaagcacagttagaagca
cgtgcgctgatgatgtctaccaacaacgtactttctccagccaatggtgagccgattatc
gttccttcgcaggacgttgtattgggtctctattatatgactcgggaaagggttaatgcg
ctaggcgaaggcatggtatttgccgatccggaagaagtggaacgggcttacggtgccaaa
aaagttgaattgcatgccaggattaaatgtcggatttctgaagtactgattgatgaggat
gggatcaaaacttatcaacgcagtattaaggaaaccacggttggccgggtcattctgtgg
ggtattgtgcctaaaggcatgccttacgagttggtgaaccagccaatgaagaaaaaggca
atttcccggttgttgaacgaagcttaccgcatggttggtctaaaagagacagttatcttt
gctgaccaggttatgtatatggggttccgtcaggcaacccgttcaggctcttcaattggt
gtaaatgacttcgagattccggctgagaaagtagagattattgccaaagctgacgccgaa
gtctcagaaatcgaagagcagtacgcttccggtttggtgacccaaggggaaaaatataac
aaggttgttgatatctggtctcgcgctaatgaacaagtagcgagagcgatgatgcaaaac
ctttccaaggaaaagacttacgataagaccggcgctgagctcgagcaagaatcattcaac
tcggtatatatgtatgctgattccggcgcccggggttcaccagcacagatgcgtcagtta
tctggtatgcgaggtctgatggccaaacctgacgggtctattattgagaacccgattaag
gcgaacttccgcgaaggtttgtcggtgggtgaatacttctcctcgacccacggggcacgt
aaaggtttggcggataccgctctgaaaacggctaactctggttatctgactcgtcgtttg
gtggatgtggctcaagatgttgtgattaccgaagtcgattgtggcaccgaggaaggcgtc
atcatggagccaatcatcgaaggtggtgacgtggtagttgggcttggtcagcaggtgttg
ggtcgtacggcagctaatgacgtactgatgccaggttctgacgatgttgcaattcccgcc
ggtaccctgattgatgagaaatgggttcgtagtattgacgaatggggtattgatcagatt
cgagttcgttcggcgatcagctgtgaaactcactacggtgtttgtgcaaaatgctatggc
cgtgatctggctcgtggacacttggttaatatcggtgaggctatcggtatcatggccgct
cagtccattggtgagccaggtacacagttgaccatgcggactttccacattggtggagct
gcttccaggtcagcggtggcggacagtgttcaggttaaacatggtggtgttgccaacctg
cataatctcaagaccgtagaacgggacaatggcgacttggttgcggtttcccgttctggt
gtgctggctgtagcggatgagcatggtagagaaagagagcgatataagctcccttatggt
gctgtgatttcggttaagtcaggtacctctgtggaagctggtgagattgtcgctaaatgg
gatccgcatacacacccgattgtggcagaaacgtctggatacgtgtcctttatcggcttg
gaagacggtattactgttaactccaaagttgatgagttgaccggtgttacttcaacagaa
gtgattcatcagaaagatcgtagtgccgcaggtaaagatattcgtccgttaattaagctg
gtggatgaagacggtgtagagctgacattcggtgaagccggtcaaccggcacagtacttc
ctgccagatggcgcattgcttaacctctctaatggtgatcgggttaaagtaggtgatgtt
attgccaggattcctcaggaaacttccggtaacaaagatattactgggggtcttccacgg
gttgcagacctgttcgaagcgcgtaagccaaaagaatcagcgattcttgctgaaattagt
ggtgtttttggtttcggtaaagaaaccaagggcaaaaagcgtcttcagatcagtccgacc
gaaggagagggatatgaagagctgattccgaagtggcgtcatttgaacgtgttcgaaggc
gaacaggttgaaaaaggtgaggtgatttccgacggtccgatgaatcctcatgacattttg
cgcattcgcggagtacgtgaactggcaagatatattgttaatgagattcaggaggtctat
cgcttacaaggcgttgtgatcaacgataagcatatcgaagtgatcatccgccaaatgcta
cgtaaggttatcattcttgacagtggcgatacaggctttatcaaaggcgatcaggtcgag
tatgtatcggttctcgaagagaatgagcgtatcgcagcagaaggtaaacagggcgccaag
tatgagagggtgttgcttggtattaccaaggcttcacttgctacagaatcattcctgtca
gcagcctccttccaggagacaactcgtgttctgaccgagggtgctgtttcgggtaaacag
gacttccttcgtggcttgaaagagaatgtcgctgttggtcgactgattccggcaggtaca
ggcttggcatatcacagtgagcgcaaacgtaaacgtgcggccaaaggtggtggtgaacgt
tttgcgaccgcaaccgcaagtgaagtcgaagcagccttgacagaggctttgaacaagtag
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integrated database retrieval system
