Gimibacter soli: PH603_01775
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Entry
PH603_01775 CDS
T09793
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gso
Gimibacter soli
Pathway
gso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PH603_01775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gso03019
]
PH603_01775
Enzymes [BR:
gso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PH603_01775
Messenger RNA biogenesis [BR:
gso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PH603_01775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WCL54485
UniProt:
A0AAE9XU31
LinkDB
All DBs
Position
382372..384372
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AA seq
666 aa
AA seq
DB search
MSDFTSLGLAAPLLRAVEAQGYTTPTAIQTETIPALMEGRDLIGIAETGGGKTAAFVLPL
LEKLVAEDKRAMRMMPRALILAPTRELAKQINDAIRDLAKFVKIRTCAIYGGDSYRTQIA
FLERGVDILVATPGRLIDHMKRGTVWLDDCHTFILDEADRMLDMGFLDDVRAVAGKMPQE
HQAVMFSATMSDEIRALTESLLENPHEVSIERTTLVADAVEHRALFTTKGDKPKLLLHLI
DREEASRVIVFVRTKAQADEIADFLNDNDFAADSLHGDKKQRERERTIRSFKTDRFSYLV
ATDVAARGLDVKDVTHVINMDTPIDPEAYVHRVGRTGRGGASGKAFTMVDRGEFGLLRAI
ERLIGATLETDSDHPFELVIDKSKGPKKSFKKDGYKRDGFRKDGPRRDFKPRGDRFGGEK
REYKPREDRFGGEKREWKPREDRDEGQKREWKPREDRFGGEKREWKPREDRFEGGKRDFK
PREDRFDGEKKPYQRREDGFEGGKRPFKDREDRFGGEKREFRGRDDRNGGEKREYRKRDD
RDGGEKREWKPREDRFSGEKRDFKPRGERSFDKRDGEKRGFGKREGGFEKREGGFEKRER
GERTERPARVMSDAEFRAKPRGNGAERRAERDAAKAKGAPTRRKAAPAKADFAKKGGYAP
LKRRAG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattttacctcgctgggcctggctgcgcctttgctgcgcgccgtggaagcccag
ggttacaccactccgaccgccattcagaccgaaaccattccggccctgatggaaggccgc
gacctgatcggtattgccgaaaccggcggcggcaagaccgctgcattcgtactgccgctt
cttgagaagctggttgccgaagacaagcgcgccatgcgcatgatgccgcgcgcgctgatc
cttgcgcctacccgcgaacttgccaagcagatcaacgatgcgatccgcgacctggccaaa
ttcgtcaagatccgcacctgcgccatctatggcggcgacagctaccgcacccagatcgcc
ttcctcgagcgcggcgtcgacatccttgtcgcgacccccggccgcctgatcgaccatatg
aagcgcggcaccgtgtggctcgatgactgccacaccttcattctcgatgaagccgaccgc
atgctcgacatgggcttccttgatgacgtgcgtgccgttgccggcaagatgccgcaggaa
caccaggccgtcatgttctcggccaccatgtcggacgaaatccgtgcgctgaccgaaagc
ctcctcgaaaacccgcatgaagtatcgatcgagcgcaccacgctggtggcagacgctgtc
gaacaccgcgcgctcttcaccaccaagggcgacaagccgaagctgctgcttcacctcatc
gaccgagaagaagcaagccgcgtgatcgtgttcgtgcgtaccaaggcgcaggctgacgag
atcgccgatttcctgaacgacaacgacttcgcggcggattcgctgcatggtgacaagaaa
cagcgcgagcgcgagcgcaccatccgttcgttcaagaccgaccgcttctcctatcttgtg
gccaccgacgttgcagcccgcgggctggacgtgaaggacgtgacccatgtgatcaacatg
gacaccccgatcgaccccgaagcctatgttcaccgcgttggccgtactggtcgtggcggc
gcctcgggcaaggccttcaccatggttgaccgtggcgagttcggcctgctgcgtgcgatc
gaacgcctgatcggtgcaacgcttgaaaccgatagcgatcacccgttcgagctggtcatc
gacaagtcgaaaggccccaagaaaagcttcaagaaagacggctacaagcgcgacggtttc
cgcaaggatggcccgcgccgcgacttcaaaccgcgcggtgaccgttttggcggcgaaaag
cgcgagtacaagccgcgtgaagaccgcttcggtggcgaaaagcgtgaatggaagccgcgc
gaagatcgcgacgaaggccagaagcgcgagtggaagccccgcgaagaccgttttggcggc
gagaaacgcgagtggaaaccgcgtgaggaccgcttcgaaggaggcaaacgcgacttcaaa
ccccgcgaggaccgctttgacggcgagaagaagccttaccaacgccgtgaagacggtttt
gaaggcggtaaacgcccgttcaaggaccgcgaagaccgtttcggcggtgaaaagcgcgag
ttccgtggccgtgacgaccgcaatggcggcgaaaaacgcgaataccgcaagcgtgatgac
cgcgatggcggtgaaaagcgtgagtggaagccccgcgaagaccgcttcagcggcgagaag
cgcgatttcaaaccccgcggcgagcgttcgttcgacaagcgcgacggtgagaaacgcggc
tttggcaagcgtgagggtggcttcgaaaaacgcgaaggcggtttcgagaagcgcgagcgc
ggtgagcgcaccgagcgtccggcccgcgtaatgtcggatgccgaattccgcgccaagccg
cgcggcaacggtgccgagcgccgtgccgagcgtgacgctgccaaggcgaagggcgcaccg
acccgtcgcaaggctgctccggcgaaagccgattttgccaagaagggcggttacgcgccc
ctgaaacgccgcgccggctga
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