KEGG   Gimibacter soli: PH603_08805
Entry
PH603_08805       CDS       T09793                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
gso  Gimibacter soli
Brite
KEGG Orthology (KO) [BR:gso00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:gso03009]
    PH603_08805 (rlmD)
Enzymes [BR:gso01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     PH603_08805 (rlmD)
Ribosome biogenesis [BR:gso03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    PH603_08805 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr MTS TRAM Methyltransf_25 TRM5-TYW2_MTfase Cons_hypoth95 Methyltransf_31
Other DBs
NCBI-ProteinID: WCL52636
UniProt: A0AAF0BL15
LinkDB
Position
1878758..1880026
AA seq 422 aa
MADDLLTLTIREVGAQGDGIADGPDGLVYIPYAAAGDVLKARITERQKSGAFAEIAEMIT
PSPARMAPPCQHFTKCGGCQLQFMSGEDYRAWVKNRVASAMGHHGFDPGVVRDPVITPPA
SRRRVALKARRTVQGVVLGFNERQSHTIVDLKACPVTRAELTILFEPLRHLLGNLLPQGM
HAVLHLTLTASGVDLVIEATKELSLADREALVSFADTYDLAAVHWQDGGFLDPVAIRREP
VMQLGAARVALPPAAFIQASDEGEAALVAAVKEGVAGAKRVADLFCGIGTFSFPLAESAQ
VLAVEGAKGALDALSAAATQATGLKQIVTRHRDLYRRPITGAELKGFDAVVFDPPRAGAK
EQAAALVASDIPVIVGVSCNPNTFARDARLLVDGGYSLTSVLPVDQFLWSSHVEIVATFR
KG
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggctgacgatcttctcaccttgacgattcgggaggttggcgcacagggcgacgggatc
gccgacgggccggacggccttgtctatatcccctatgccgctgccggtgacgtgctgaag
gcgcggattaccgaacggcaaaagtccggcgctttcgccgagatcgccgagatgatcacg
ccgtcgcccgcccgcatggcgccgccatgccagcatttcaccaaatgcggtggctgccag
ctgcaattcatgagcggcgaggattaccgcgcctgggtgaaaaaccgggtggcctccgcc
atggggcatcacggcttcgatcccggtgtcgtgcgcgatccggtcatcacaccgcctgcc
agccgccgccgggtggcgctgaaggcccgccgtaccgtgcagggtgtggtgctgggcttc
aacgagcggcagagccatacgattgtcgatctgaaagcctgcccggtaacgcgggccgag
ctgaccattcttttcgagccgctccggcatctgctcggcaacctgctgccgcaaggcatg
cacgccgtgctgcacctgaccctgacggcaagcggggtcgatctcgtgatcgaggcgacg
aaggaactgagccttgccgaccgcgaggcgctggtcagctttgccgatacctatgatctt
gccgccgttcactggcaggatggcggtttccttgatcccgttgcgatccgccgcgaaccg
gtgatgcagctgggtgcggcacgcgttgccttgccgccggcggcgttcattcaggcgtcg
gacgaaggcgaggcagcccttgtggcggctgtgaaagaaggtgtggctggtgcgaagcgc
gtggccgaccttttctgcggtatcggcaccttcagcttcccgctcgctgaaagcgcgcag
gtgctggcggtggaaggggccaagggggcgcttgacgcgctgtctgccgccgccacacag
gcaaccggcctgaaacagattgtcacccgccaccgcgacctttaccggcgcccgatcaca
ggggcggagctcaagggcttcgacgccgtagtgttcgatccgccgcgcgccggtgccaag
gagcaggcggcagccctcgtggcatccgacattccggtgattgtcggggtttcgtgcaac
cccaacaccttcgcgcgggatgcgcggcttttggtggatgggggctacagcctgacaagc
gtcctgccggttgaccagttcctatggtcgtcccatgtcgagatcgtggcgactttccgc
aagggctga

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