Gimibacter soli: PH603_09480
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Entry
PH603_09480 CDS
T09793
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gso
Gimibacter soli
Pathway
gso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PH603_09480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gso03019
]
PH603_09480
03009 Ribosome biogenesis [BR:
gso03009
]
PH603_09480
Enzymes [BR:
gso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PH603_09480
Messenger RNA biogenesis [BR:
gso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PH603_09480
Ribosome biogenesis [BR:
gso03009
]
Prokaryotic type
rRNA processing factors
PH603_09480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WCL52769
UniProt:
A0AAF0BJ70
LinkDB
All DBs
Position
complement(2022343..2025150)
Genome browser
AA seq
935 aa
AA seq
DB search
MSTRMLIDARHPEETRVAVIEGSRVEEFDYESASRRQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVEDRDKLKAEEFETAKVEEILPAPVKEAAAPVEAEADA
DAEHEDADGEEPIEATVLQENAEEEADAHLEEAAERRRSIRTLKRRYNIQEVIKRRQIIL
VQVVKEERGNKGAALTTYLSLAGRYCVLMSNSTHGGGISRKISSTADRKRLKSVIGELDV
PAGMGLIIRTAGMQRTKAEIKRDYEYMLRLWSGIRELTLKSVAPALIYEEGDLIKRTIRD
LYTREIDEILVEGEKGYRAAKDFMKLLMPSHARKVQHYKDRIPLFHRYQVESQLETMYQP
VVTLKSGGYIVINPTEALISIDVNSGRATKEHNIEETALHTNLEAADEIARQLRLRDLAG
LIVIDFIDMEERGNNRNVERRMKEALKADRARIQVGRISSFGLMEMSRQRLRPNLQETSM
VTCSTCKGTGLVLSVEFAALNALRQLEEEGIRARSTVVRIATSPDVAIYILNKKRDALVE
LEAQYGYQIEVIAKTGFGNSDIELTREAGTPTIRAVEPATVITQENIAEFDAEDEEDDIE
DIEEEEVRTNAREERGDADPRRKRRRRRRRGRGGEAERGDEQRTARRDEDGEEAAADEAG
EGADEDNGEGEARADGESRSRRRRGRRGGRRRRGRGEEGQRDDVAAEDAGVATEARSEAA
DAEAADADAGEEAAADGNIPAPKPRRRRRVKRAEGAEGEAAVETAEAPAEEVKAEAEEAP
AKKPRARRKTKAQLAAEAEAAAAETAVEAPAEEAKVEAEEAPAKKPRARRTTKAKPKAEE
AAPEAAPEATEAPAEEAPAEPKKKAAPRKRKAPAKTAAAEAPAAAVKAEKSAAEPAAEPA
TAAPAAHPALQVTTVEAGADGDQPKRKGWWQRTFG
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacgtatgttgatcgatgcccgccacccggaagagacccgggttgccgtaatc
gagggtagccgcgtcgaggaattcgactacgaatccgcttcccgccgtcaacttaaaggc
aatatctatctggcccgcgtcacccgcgtcgagccgtcgctgcaagccgcattcgttgaa
tacggcggcaaccgtcatggctttctggccttcagcgaaatccacccggattattaccag
atcccggttgaagaccgcgacaagctgaaagccgaggaattcgagaccgccaaggtcgag
gaaatcctgcctgcaccggtgaaagaagctgctgccccggtagaagccgaagcagacgct
gacgccgagcatgaagatgccgacggcgaagagccgatcgaagccaccgttctgcaggaa
aacgccgaggaagaggctgacgcccaccttgaggaagcagctgaacggcgccgttcgatc
cgcaccctgaagcgtcgctacaacattcaggaagtgatcaagcgtcgccagatcatcctt
gtgcaggtcgtgaaggaagagcgcggcaacaagggcgctgcgctgactacctatctgtcg
ctcgccggccgttactgcgtgctgatgtcgaactcgacccacggcggcggcatcagccgc
aagatttcgtcgacggctgaccgcaaacgcctgaaaagcgtgatcggcgagctggacgtg
cctgccggcatgggcctcatcatccgcaccgccgggatgcagcgcaccaaggccgagatc
aagcgcgactatgaatatatgctgcgcctctggagcggcatccgcgaactgaccctgaaa
tcggtggcccctgccctcatctatgaggaaggcgacctgatcaagcgcaccatccgcgac
ctttacacccgcgagatcgacgagatccttgtcgagggcgaaaaaggctatcgcgccgcc
aaggacttcatgaagctcctgatgccgagccacgcaaggaaggttcagcactacaaggac
cgcatcccgctgttccatcgctatcaggtggaaagccagctggagaccatgtaccagccg
gtcgtgacgctgaagtccggcggctatatcgtcatcaacccgaccgaagcgctgatctcg
atcgacgtgaactcgggccgggcgacgaaagaacacaatatcgaggaaaccgcgcttcac
acgaaccttgaagccgcagacgagatcgcacgccagctgcgcctgcgcgaccttgcgggc
ctcatcgtcatcgacttcatcgacatggaagaacgcggtaacaaccgcaatgtcgaacgt
cgcatgaaggaagccctgaaggccgaccgcgcccgcattcaggtgggccgcatctcgagc
ttcggccttatggaaatgtcgcgccagcgcctgcgtccgaacctgcaggaaaccagcatg
gtcacctgctccacctgtaaagggacggggcttgtgctgtcggttgaattcgctgcactc
aatgcgctccgccagcttgaggaagaaggcatccgcgcccgcagcacggttgtccgaatc
gccacgagcccggacgttgccatctatatcctgaacaagaagcgcgacgcccttgtcgaa
ctggaagcccagtatggctaccagatcgaagtgatcgccaaaaccggcttcggcaattcg
gatatcgaactgacccgtgaagccggcacgccgacgatccgcgcggttgagcccgcaacg
gttatcacgcaggaaaatatcgccgaattcgacgctgaagacgaagaagacgatatcgag
gacatcgaggaagaagaagtccgcaccaatgcccgcgaagaacgcggtgatgccgacccg
cgccgcaagcgccgtcgtcgtcgtcgtcggggccgtggtggcgaagccgaacgtggtgac
gaacagcgcactgctcgccgtgatgaagacggcgaagaagctgccgctgatgaagccggc
gaaggcgccgacgaagataatggcgaaggcgaagcccgcgctgacggtgaaagccgctcg
cgtcgtcgtcgcggtcgtcgtggtggtcgtcgtcgtcgcggtcgcggcgaagaaggccag
cgcgatgacgtggcagccgaagacgcaggcgttgcgaccgaggctcgctcggaagccgct
gacgctgaagcagccgacgccgatgcaggcgaagaagccgctgccgatggcaatatcccg
gcacccaagccgcgccgtcgtcgccgcgtgaaacgtgctgagggtgccgaaggcgaagct
gctgtggaaaccgcagaagcaccggctgaggaagtgaaagctgaagcggaagaagcaccg
gccaaaaagccgcgtgcccgtcgcaagaccaaggcacagctcgccgccgaggccgaagca
gccgcagcggaaaccgccgtggaagcacccgctgaggaagcaaaggtggaagcggaagaa
gcaccggccaaaaagccgcgcgcccgccgcaccaccaaagccaagccgaaggctgaggaa
gccgcccccgaggcagcccccgaagccactgaagccccggctgaggaagcaccggccgag
ccgaagaagaaagctgccccccgcaagcgcaaggcgcctgcgaaaacagcagcagccgaa
gcaccggcagcagccgtgaaggcggaaaagtccgctgcagaaccggccgcagagcccgcg
accgccgcacctgccgcacatccggcgctgcaggtcaccacggtggaagctggcgccgat
ggcgaccagccgaagcgcaaaggctggtggcaacgcaccttcggctaa
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