Gimibacter soli: PH603_11865
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Entry
PH603_11865 CDS
T09793
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gso
Gimibacter soli
Pathway
gso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PH603_11865 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gso03400
]
PH603_11865 (mfd)
Enzymes [BR:
gso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PH603_11865 (mfd)
DNA repair and recombination proteins [BR:
gso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PH603_11865 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
UvrB_inter
DEAD
CarD_TRCF_RID
ResIII
MFD_D3
AAA_30
UB2H
Cas3-like_C_2
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WCL53231
UniProt:
A0AAE9XN50
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All DBs
Position
2530013..2533540
Genome browser
AA seq
1175 aa
AA seq
DB search
MTNPAADALPFALALDALTSGDPVTRMSGVVPGFDGMMLGALASRVFGKGKRALVHVARD
DARLAALEATVRFFSPEIEVITFPAWDCLPYDRVSPAGEIVAHRMATLAELAARKPKGPL
LLLTTINAALQRVVPKSAVATSSLMATPGDTLSMDDVIAFLVGAGYRRAGQVMEAGEFAV
RGGLVDIFPSGEAEPVRLDFFGDELDAIRRFDPFTQLTTQKADKLHLISASEIAFTPEAI
SRFQRTYTSTFGPAKGEDPLYEAVLDGRRYQGAEHWLPFFHERLETIFDYLDDPVVTLDH
QTDEAAAERFTAVADYYTARKEAWETAKATKDTRIPPYKPVPAESLFLDAEGWGDLTDVL
GALHLTPFKAPQVPGLVAFDAAQGRDFAPERAAREGNIYDTLKTHVDALRDAGKRVVFAS
YSEGAAERLKGVLEDHGVKPVGVAEGWADIRHANPRLVAITVLPLESGFETADLAIISEQ
DVLGDRLVRKVRRSKKADNFLTEAAALSPGDLVVHASHGIGRFEGLETVEVTGAAHDCVL
LTYHGGDKLFVPVENIEVLSRYGSDETGAQLDKLGGVAWQARKAKMKERIREMAGELIKL
AAARALKEGNPIAATDGAYEEFCARFPYAETDDQLRAIADVATDLASGRPMDRLICGDVG
FGKTEVALRAAFLAVMAGYQVAVIAPTTLLARQHFQTFTERFKGLPVRIAQLSRLVSTKE
ANASKDEMKDGKLDIVIGTHALLGKGIGFRDLGLMIVDEEQHFGVAHKERLKALKANVHV
LTLTATPIPRTLQMAMSGIRDLSIIATPPVDRLAVRTFVLPFDPVVIREALLREHYRGGQ
SFFVVPRISDIAEAADFLKEQVPEVRFTIGHGQMAASELEDVMTAFYEGKYEVLLSTTIV
ESGIDIPTANTMVLYRADRFGLAQMYQLRGRVGRAKVRAYAYLTTPPGQMISDNADKRLQ
VLQTLDTLGAGFTLASHDMDIRGAGNLLGEEQSGHIREVGVELYQKMLEEAVAEARAGGF
EEAETDWSPTINVGATVMIPESYVPDLNQRMALYRRLADLDTREEIDGFAAELIDRFGPL
PPPVKQLTAIMIIKGHAKRAGIDKLEAGPKGVIIGFRGDKFENPAGLVEFISGSGIRAKL
RPDHKLIYFAAEAKIGARLKMVHALVKELEVRARR
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaccctgccgccgatgctctgccctttgccctcgcgctcgacgccctgacgagc
ggcgaccccgtcacgcgcatgtccggcgttgtgccgggcttcgatggcatgatgctcggg
gcgctggcctcccgtgtgttcggtaagggcaagcgggcgctcgttcatgtggcgcgggat
gacgcacggctcgccgcccttgaagccaccgtccgcttcttctcgcctgaaatcgaggtc
atcaccttcccggcgtgggactgcctgccttatgaccgcgtgagcccggcgggggagatc
gtggcgcaccggatggcgacgctcgccgagcttgccgcacgcaagcccaaaggccctctc
cttctcctcaccaccatcaacgccgccctgcagcgtgtggtgccgaaatcggcggtagcg
acatcaagcctgatggccacccccggcgatacgctttcgatggacgatgtgatcgccttc
cttgtcggcgccggttaccgccgtgcgggacaagtgatggaagccggcgagtttgcggtg
cgcggtggccttgtcgatattttcccctcgggtgaagccgaacccgtgcggctcgatttc
tttggcgacgagctggatgccattcgccgcttcgatcccttcacgcagctgacgacccag
aaggcggacaagctgcatctgatctcggctagcgaaattgccttcacgcccgaagccatc
agccgcttccagcgcacctacacatccaccttcggccctgccaagggtgaagacccgctt
tatgaagccgtgcttgatggccgccgctatcagggcgccgaacactggctgcccttcttc
catgagcggctggagacgatcttcgattatctcgatgatccggtcgtcaccttggatcac
cagacggatgaagccgccgccgagcgcttcacggccgtagctgactattacactgcccgc
aaggaagcctgggaaaccgccaaggcgacaaaagacacccgcatcccgccctacaagccg
gtgccggcggaaagcctgtttctggatgctgaaggctggggtgacctcaccgatgtgctg
ggtgccctgcacctgacgcccttcaaggccccgcaggtgccgggtcttgtggcattcgat
gcagcacagggccgcgacttcgctccggaacgcgccgcccgcgaaggcaatatctatgac
acgctgaaaacccacgttgatgccctgcgggacgccggcaaacgggtcgtgttcgccagt
tactcggaaggcgctgccgagcgcctgaagggtgttctggaagaccacggcgtgaagcca
gttggcgtggccgagggctgggccgatatccgccacgccaatccgcgccttgtggccatc
acagtgctgccgcttgaaagcgggttcgagaccgccgacctcgccatcatcagcgagcag
gatgtgctgggcgaccggctggtgcgcaaggtgcgccgctccaagaaggccgacaatttc
ctgaccgaagccgccgccctcagccccggtgatctggtcgtgcacgccagccatggcatc
gggcgcttcgaagggcttgagaccgtagaggtgacgggagcagcgcatgactgcgtgctt
ctcacctatcatggcggcgacaagctttttgtgccggtcgagaatatcgaggtcctgtcg
cgttacggcagcgacgaaaccggcgcccagctcgacaagcttggcggtgttgcgtggcag
gcccgcaaggcgaagatgaaagagcgtatccgcgagatggcgggggagctgatcaagctt
gccgctgcccgcgcgctcaaggaaggcaatcccatcgccgccaccgacggcgcctacgag
gaattctgcgcccgcttcccctacgccgaaacggacgatcagctgcgcgccatcgccgat
gtggcgaccgaccttgcgtccggtcgcccgatggaccggctcatttgcggcgacgtgggt
ttcggcaaaaccgaagtggccctgcgtgcggctttccttgccgtgatggctggctatcag
gtggcggtgatcgcgccgaccacccttcttgcccgtcagcatttccagaccttcaccgag
cgcttcaaggggctcccggttcgcattgcgcagctttcgcggcttgtttccaccaaggag
gcaaacgccagcaaggacgagatgaaggacggcaagctcgatatcgtgatcggcacccac
gcccttctcggcaaggggatcggcttccgcgacctcggcctgatgattgtggacgaagag
cagcatttcggcgtggcccacaaggagcgcctgaaggcgctgaaagccaacgtccacgtg
ctgaccctgaccgccacccccatcccgcgcaccctgcagatggcaatgagcggcatccgt
gatctttcgatcatcgcgaccccaccggtggacaggctggccgtgcgcaccttcgtactg
ccgttcgaccccgtggtgatccgcgaggcgctcttgcgcgagcattacaggggcggccag
agcttcttcgtggtgccgcgcatctcggatatcgccgaggctgccgacttcctgaaggaa
caggtgcccgaagtgcgcttcaccatcggccacggccagatggccgcaagcgaactggaa
gatgtcatgaccgccttctacgagggcaagtatgaagtgcttctgtccaccaccattgtg
gaatccggcatcgatatccccactgcgaatacaatggtgctataccgcgctgaccggttt
ggcctggcgcagatgtaccagctgcgcgggcgtgtggggcgcgccaaggtgcgggcttat
gcttatctgaccaccccgcccggccagatgatcagcgacaatgccgacaagcgcctgcaa
gtgctgcaaacgctggatacgctcggcgccggcttcacgcttgccagccacgatatggat
atccggggcgcggggaacctccttggcgaggaacagtccggccatatccgcgaggtgggc
gtcgagctttaccagaagatgctcgaggaagccgtggccgaagcccgtgccggcgggttc
gaggaagcggaaaccgactggtcccccaccatcaatgtgggcgccaccgtgatgattccg
gaaagctatgtgccggatctcaaccagcgcatggcgctatatcgccgccttgccgacctc
gacacgcgcgaagaaattgatggatttgccgccgaattgatcgaccgtttcggcccgctg
ccgccaccggtgaagcagctgaccgccatcatgatcatcaagggccacgccaaacgggcg
gggatcgacaagctggaagccggccccaagggtgtcatcatcggtttccggggcgacaag
ttcgaaaatccggcgggtcttgtggagtttatctccggcagtggtatccgggcaaaactc
aggccggatcataagcttatttacttcgccgccgaagcaaagatcggtgcgcgactgaag
atggtgcacgctcttgtaaaagagctggaagtacgcgcacggcgttaa
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