Gluconobacter sphaericus: IGS75_10040
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Entry
IGS75_10040 CDS
T07169
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gsp
Gluconobacter sphaericus
Pathway
gsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IGS75_10040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsp03019
]
IGS75_10040
03009 Ribosome biogenesis [BR:
gsp03009
]
IGS75_10040
Enzymes [BR:
gsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IGS75_10040
Messenger RNA biogenesis [BR:
gsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IGS75_10040
Ribosome biogenesis [BR:
gsp03009
]
Prokaryotic type
rRNA processing factors
IGS75_10040
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4196
Motif
Other DBs
NCBI-ProteinID:
QQX90519
LinkDB
All DBs
Position
complement(2110896..2113697)
Genome browser
AA seq
933 aa
AA seq
DB search
MTKRMLIDTTHAEETRVVVMDGDRVEDYDVETSTKKQLKGNIYLAKVIRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYFQIPVADREKLIALQEEEIAERGESSDDGETETVTEEATDSE
DGDNQDRRAPETVGGEHDTGEESVASRRTARFLRNYKIQEVIRRRQVLLVQVVKEERGNK
GAALTTYISLAGRYCVLMPNALRGGGVSRKITSDADRRRLRDVIAELDLPKSMAMIVRTA
GAGRPAQEVTRDCEYLLQLWDDIRSHALSSVAPTLVYEEASLIKRVIRDLFSKDIEDILV
DGEAAWKSAREFMRLLMPSNANKVKLWQNRGQSLFARYNVEGHLDAMFSPTARLPSGGYL
VINQTEALVAIDVNSGKSTSQRNIEETALRTNLEAAEEVARQLRLRDLAGLVVIDFIDME
SRRHNAQVEKRLKEALRSDRARIQVGHISHFGLLEMSRQRLRPSIAESVLTPCPHCQGTG
FIRGTESSALHVLRAIDEEGARQRSSEIEVHVGSDIALYILNHKRSWLADIERHHRMQVI
FCTEENLAAADMRIERLQAQTPAPAQIRAPERAPEHVRTIEIIEEEAPVVVRTETPVVDA
EIIKDVTTSESEEESNGGRRRRRRRRRGGRREQNGDVPAAEYSQEQDVPKAETREIPAPE
AADENGIIPGRRRTRFKRVLKDTEGSDDTAAQPVSEVRDVAPTRQAVTNRSSAPAPARTQ
HRREEREERPAPRRYTGPTPADPFGGSFDIFDVIEQAELEGTTEALQTGISTPTEIVIEH
VPAAETPIVVEEPAVEETAKPRRGRGRRPTRAKAVETAPAETITEEAPATETALTSEEPV
AEEAPKPRRTRTRRTPKAQPVEAEAPAEPIAEAAATSAETVSEEAAKPKRTRARRTPKAK
PVETQTTEEGNILQPVNIDEVAPTKRRAGWWKR
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcgtatgctcatcgacaccacgcacgcggaagaaacgcgtgttgtggtcatg
gatggtgaccgcgtcgaagattacgacgtcgagacatcgaccaagaagcagctcaagggc
aatatctatcttgccaaggtcattcgcgtagagccgagccttcaggctgctttcgtcgaa
tacggcggcaaccgccacggcttcctcgccttcagcgaaatccaccccgactatttccaa
attcctgtcgcagatcgcgagaagctcatcgcgctccaggaagaagaaattgccgaacgc
ggcgagtcttccgatgatggcgagaccgaaacggttaccgaagaggccacggacagcgaa
gacggcgacaatcaggaccgtcgtgctcccgagactgtcgggggcgagcacgatacgggc
gaggaaagcgtagcatcgcgccgcacggcccgtttcctgcgcaactacaagattcaggaa
gtcatccgccgccgtcaggtgcttctggtgcaggtcgtcaaggaagagcgcggcaacaag
ggcgcggccctgaccacctacatctcccttgccggtcgctattgtgtcctgatgccgaac
gccctgcgtggcggtggcgtctcacgcaagattacatccgatgctgatcgccgccgtctg
cgggacgtgattgcagagctggacctgccaaagtccatggcaatgatcgtccgcaccgct
ggcgccggacgcccggcgcaggaagtgacgcgcgactgcgaatatctgcttcagctctgg
gacgacatccgttcccacgcgctatcttcagtcgcgccgacgctggtctatgaggaggca
agcctcatcaagcgcgttatccgtgatctgttttccaaggacatcgaagacatcctcgtg
gatggcgaagcagcctggaaaagcgcacgcgagttcatgcgcctgttgatgccgagcaat
gccaacaaagtgaagctctggcagaaccgcggccagagcctgttcgcacgctacaatgtc
gaaggccatctggacgcgatgttctcgccgacggcgcgtctgccgtcgggtggctatctg
gtcattaaccagaccgaagccctcgtcgccatcgacgtaaactccggcaaatccacctcc
cagcgcaacatcgaggaaacggcactgcgcacgaacctcgaagcagccgaggaagtcgcc
cgtcagctgcgcctgcgcgatctggccggtctggtcgtgatcgatttcatcgacatggaa
agccgccgccacaacgcgcaggttgagaagcgcctcaaggaggctctgcgctccgatcgc
gcacgcattcaggtcgggcatatctcccatttcggcctgctcgaaatgtcccgtcagcgc
ctgcgtccgtccattgctgaatctgtactgacaccctgcccgcactgtcagggcaccggc
ttcatccgtggcaccgagagctcggccctacacgtcctgcgcgccattgacgaggaaggc
gcacgccagcgttcgtccgaaatcgaggtgcatgtaggctcggacatcgcgctttacatt
ctcaatcacaagcgctcttggctggcggatatcgagcgccatcaccgcatgcaggtgatt
ttctgcacggaggagaacctggctgcggctgatatgcgcatcgagcgccttcaggcccag
accccggctcccgcccagatccgtgcgccggaacgcgcaccggagcatgtccgtacgatc
gagatcatcgaagaagaagcgcctgtcgtcgtgcggacggaaacgcctgttgtcgacgcc
gagatcatcaaagacgtaacgacatccgagagcgaggaggaaagcaacggaggccgccgc
cgccgccgccgccgccgtcgtgggggccgtcgcgagcagaacggtgacgtcccggcagcg
gaatacagccaggagcaggatgttcccaaggctgaaacgcgcgagatccccgctcccgaa
gccgctgacgaaaacggtattatcccgggccgtcgccgtacccgcttcaagcgtgtcctc
aaggacactgaaggctctgacgatacggctgcacagcccgtatccgaggtccgtgacgtc
gccccgacacgccaggcagtaaccaaccgttcgagcgcacctgccccggcccgtacccag
catcgtcgtgaagagcgcgaggaacgtccggcaccgcgtcgctatacgggtccgacgcct
gccgatccgttcggtggcagcttcgacatcttcgacgtgatcgagcaggccgaacttgaa
gggacgaccgaagcccttcagactgggatcagcacgcccacggaaatcgtgatcgagcat
gtcccggctgctgaaacgcccatcgtcgtggaagaaccagcagtcgaggaaaccgccaag
ccccgtcgtggccgcggacgtcgtccgacccgcgccaaggctgtggaaaccgctccggcc
gagaccattacggaagaagccccggcgacagaaaccgctttgacttcagaagagcctgtg
gccgaagaggctcccaagccgcgtcggacccggacacgccggacgccgaaggctcagccc
gtcgaggctgaagccccggctgagcccatcgcggaagcagctgcgacttccgcagagact
gtttctgaagaagccgccaagccgaagcgcacccgcgcccgtcgcacaccgaaggccaag
cccgtcgaaacccaaaccaccgaggaagggaatatccttcagccggtgaacatcgatgaa
gtcgcgccaacgaagcgtcgtgccggctggtggaagcgctga
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