Geobacillus subterraneus: GS3922_11210
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Entry
GS3922_11210 CDS
T04323
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gsr
Geobacillus subterraneus
Pathway
gsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GS3922_11210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsr03019
]
GS3922_11210
Messenger RNA biogenesis [BR:
gsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GS3922_11210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
HVO_0513_N
Motif
Other DBs
NCBI-ProteinID:
AMX84184
UniProt:
A0ABN4NP71
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Position
2287230..2288897
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AA seq
555 aa
AA seq
DB search
MKLLTDQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYL
VKHAEKVKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLI
EIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANRVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
SDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
VLGISDSEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
AAGPDIISRGFVYMRESGDLISEAQALIAKHLEKVLERKTNQWSEIKNEITETLAPFLYE
RTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaactattaacagatcaacaagttggcgtttttgccctcggcggactcggtgaaatc
gggaagaatacatacggcgtacaatttcaggacgaaattattgtgatcgacgcgggcatt
aaatttccggaagacgaactgctcggcatcgactacgtcatcccggactattcgtattta
gtgaagcatgcggaaaaagtgaaagggctgttcattacccacgggcatgaagatcatatc
ggcggcattccgtacttgctccggcaggtgaacatccccatttacggcggcaaactggcg
ctcgggctcattcgcaacaaactcgaagaacacggattgcttcgccaagctaagctcatt
gaaattcgcgaagacgatgtcatccgttttcaaaaaacagcggtcacctttttccggacg
acgcacagcattccggacagctacggcatcgtcgtcaaaacgccagtcgggcaaatcgtc
cataccggagactttaaattcgactttacgccggtcggcgaaccagccaatttgacgaaa
atggctgaaatcgggaaagaaggcgtcctttgcctgctttcagacagcacgaacagcgaa
attccgcatttcacgatgtcagagcggcgcgtcggcgaaagcattcacgacattttccgc
aaagtggacggacggattatttttgcgacgtttgcctccaacatccaccggcttcagcaa
gtgacggaagccgcagtcgccaacaaccggaaaatcgccgtctttggccgcagcatggaa
gcggccattgaaatcggccaagatctcggctacattaaatgtccgaaaggcacgttcgtc
gatgcaaacgaaatcaaccgactgccggcgaatcgggtgacgattttatgcaccggcagc
caaggtgaaccgatggccgccttgtcgcgcatcgccaacggcacgcaccggcaaattcaa
atcatcccgggtgacaccgtcgtcttttcttcatcgccgattccgggcaacacggtgagc
gtcaaccgaacgatcaacatgctgtaccgggccggcgccgaagtgatccacggcccgctc
agcgacatccacacgtccgggcacggcggacaggaagaacaaaagctgatgatccggctt
atgaagccaaaatattttatgccgatccacggcgaataccggatgcaaaaaatgcacgcc
aagctcgccatcgactgcggcgtgccggaggaaaactgctttattatggataacggcgaa
gtgctcggcatcagcgacagcgaagcgcgcatcgtcggcaaaattccgtccggctcggtt
tacatcgacggcagcggggtcggcgacatcggcaacatcgtcttgcgcgaccgccgcatt
ttgtcggaggaagggctcgtgatcgttgtcgtcagcatcaacatgaaagagttcaaaatc
gctgccgggcctgatattatctcccgcggcttcgtctacatgcgcgagtcgggcgatttg
atcagcgaggcgcaggcgctcatcgccaaacatctcgaaaaagtgcttgagcgaaaaacg
aatcaatggtcagaaattaaaaatgaaattactgaaacgctcgccccgttcttgtacgaa
cggacgaaacggcggccgatgatcttgccgatcatcatggagatttaa
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