Geobacillus subterraneus: GS3922_14590
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Entry
GS3922_14590 CDS
T04323
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gsr
Geobacillus subterraneus
Pathway
gsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GS3922_14590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsr03019
]
GS3922_14590
03009 Ribosome biogenesis [BR:
gsr03009
]
GS3922_14590
Enzymes [BR:
gsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GS3922_14590
Messenger RNA biogenesis [BR:
gsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GS3922_14590
Ribosome biogenesis [BR:
gsr03009
]
Prokaryotic type
rRNA helicases
GS3922_14590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AMX84764
LinkDB
All DBs
Position
complement(3012775..3014178)
Genome browser
AA seq
467 aa
AA seq
DB search
MTTFQELGLSQDVMKAVERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI
VEKVDVKNGAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKQ
PHVIVGTPGRIIDHIHRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILRHVPTERQTLL
FSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPREIGQLHHIERTTK
RKMERMKPPTLDEALEGQQRVAIEKLLNVAETENLSFYKRAAEELLEEHDSVTIVAACLK
MLTREPDTTPVKLTEEPPLAVKREKKRGGRPDGSARGRTKKRRITAH
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttcaagaattaggattaagccaggacgtaatgaaagctgtcgagcggatg
ggatttgaagaaacgaccccgattcaagcaaaaacgatcccgctcagcctgcaaaataaa
gatgtgatcggccaagcgcaaaccggaacggggaaaacagccgcgtttggcatcccgatc
gtagaaaaagtggatgtgaaaaacggggccgttcaggcgctcgtcgtcgcgccgacgcgc
gagcttgccattcaagtgtcggaagaactatataaaatcggtgcggtcaagcgggtgcgc
gtcttgccgatttacggcggccaagatattgagcggcaaattcgcgccttgaaaaaacaa
ccgcacgtcatcgtcggcacgccaggccgcatcatcgaccatattcaccgcgggacgctc
cgccttgaacatgtgcatacggtcgtgctcgatgaagccgatgagatgcttaatatgggc
tttatcgaagatattgaggcgattttgcgccatgtgccgaccgaaaggcagacgttattg
ttctcggcgacgatgccggatccgatccgccgcattgccgagcggtttatgaacgatccg
gaactcgtgaaggtgaaggcaaaggaaatgaccgtgccgaatatccagcaatattatttg
gaagtgcacgagaaaaagaaatttgacattttaacacggcttctcgatatccaggcgccg
gagctggcgattgtgtttggccgcacgaaacggcgcgtcgacgaactcgctgaagcactc
aacttgcgcggctatgcggcggaaggcatccatggcgatctaagccaggcgaagcggttg
tcggtgctgcgcaagtttaaagaagggtcaattgaaattttagttgccaccgacgtcgcg
gcgcgcggattggacatttccggtgtgacgcacgtgtataactttgacatcccgcaagat
ccggaaagctacgtccaccggatcgggcgcacgggacgcgccggcaagacaggaatggcg
atgacgtttgtgacaccgcgggaaatcggccagctccatcatattgagcggacgacgaag
cggaaaatggagcggatgaaaccgccgacgctcgatgaggcgctcgaaggccaacagcgc
gtcgccattgaaaagctcctcaacgtggcagaaacggaaaatttatcattttacaaacga
gcggctgaggaattgcttgaagagcatgactccgtgacgatcgtcgccgcctgcctgaaa
atgttgacgcgcgaaccggacacgacgccggtgaagttgacggaagaaccgcctttagcg
gtcaaacgggagaaaaagcggggcggccgcccggacggttcggcgcgcggccggacgaaa
aaacggcggattacggcgcattaa
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