Geobacillus subterraneus: GS3922_15135
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Entry
GS3922_15135 CDS
T04323
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gsr
Geobacillus subterraneus
Pathway
gsr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gsr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GS3922_15135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsr03021
]
GS3922_15135
03400 DNA repair and recombination proteins [BR:
gsr03400
]
GS3922_15135
Enzymes [BR:
gsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GS3922_15135
Transcription machinery [BR:
gsr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GS3922_15135
DNA repair and recombination proteins [BR:
gsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GS3922_15135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
BSH_YknX
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AMX84852
UniProt:
A0ABM6AER0
LinkDB
All DBs
Position
complement(3106514..3110113)
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNKFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRAYREKYGQSFQASMGAEAIKKLLQ
DIDLDKEVATLKEELKTAQGQRRARIIKRLEVLESFRSSGNDPAWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVERGLAHNIKSAKRKIERVHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAVGEGMVFKDTDEALLAYHNGYVHLHSRIAIH
AGSLKNETFTEEQNNKLLLTTVGKLIFNEILPKSFPYINEPTTENIEGRTPDKYFLDKGV
DVREEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDRMKDLGFQYSTKAGITIGV
ADIVVLPEKQEILDEAQAKVDTVLKQFRRGLITDEERYERVISVWSAAKDKIQDLLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGILARALTDGTEVVVKLE
ERLVGRYAHKTVHHPETGEVIVRKGEMITEDIANEIIKAGITEVWIRSVFACNTRHGVCK
KCYGRNMATGMDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQELF
EARNPKGQAVISEIDGTVISINETRDNQYEIVVQSEVETRSYVAPYNARLKVEEGQHVER
GQELTEGSVDPKQLLRVRDITSVQEYLLREVQKVYRMQGVEISDKHIEVMVRQMLRKVRV
IDAGDTDVLPGTLLDVHQFTDVNAQAIREGKRPATARPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMARYRNVKPAVKKETAGDTVPSK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtcaataagtttgagtacatgaaaatcgggctcgcttccccggagaaaatt
cgttcctggtcgtacggtgaggtcaaaaaaccggaaacgatcaactatcggacgttaaag
ccggaaaaagacggcctgttttgcgagcgcattttcggcccgacgaaagactgggagtgc
cattgcggcaagtataagcgcgtccgctacaaaggcgtcgtgtgcgaccgctgcggcgtc
gaagtgacgcgttcaaaagtccgccgcgaacggatgggtcatatcgagctcgccgccccg
gtttcgcacatttggtatttcaaaggcatcccgagccggatgggccttgtacttgacatg
tcgccccgggcgcttgaggaagtgatttactttgcttcgtacgtcgtcaccgacccgggc
gatacgccgcttgagaaaaaacagctgctatcggaaaaagaataccgcgcctatcgcgaa
aaatatggccaatcgtttcaggcgtcgatgggggctgaggcgattaaaaagctgctccaa
gacattgacttggataaagaagtggccacgctgaaggaagagctgaaaacagcgcaaggg
caacggcgcgcccgcattattaaacggcttgaggtgcttgagtcgttccgcagctcaggg
aacgacccggcttggatggtgcttgatgtgctgccagtcattccgccggaactccgtccg
atggttcagctcgatggcggacggtttgcgacatcggacttaaacgacttataccgccgt
gtcattaaccgcaacaatcgcttgaaacggttgcttgaccttggcgcaccgaacattatc
gttcaaaacgagaaacggatgctgcaagaggccgtcgatgcgttgatcgacaacggccgc
cgcggccgcccggtgaccgggccggggaaccgtccgttaaagtcgctttcccacatgctg
aaaggaaagcaaggacgcttccggcaaaacttgctcggcaagcgggtcgactattctggc
cgttccgtcattgtcgtcggtccgaacttaaaaatgtatcaatgcggactgccgaaagaa
atggcgctcgagctgtttaagccgtttgtcatgaaggagctcgttgagcggggcttggcg
cacaacattaaaagcgcgaaacggaaaattgagcgcgtgcatcctgaagtatgggatgtg
ctcgaggatgtcattaaagaacatccggtgctgttaaaccgcgccccgacgcttcatcgc
ctcggcattcaggcgtttgagccgacgcttgtcgaagggcgggcgatccgtcttcatccg
ctcgtttgtacggcgtacaacgctgactttgacggcgatcaaatggcggtgcacgtgccg
ctgtcagccgaagcgcaagcggaagcgcgcctgttgatgctggcggcgcaaaacattttg
aacccgaaagatgggaaaccggtcgttacgccttcgcaagacatggttttaggaaactat
tacttgacgatggaacgcgaaggggcggtcggcgaaggcatggtattcaaggatacagac
gaggcgctgcttgcctaccataacggctatgtccatctccattcgcgcatcgccatccat
gccggttcgctgaaaaacgaaacgtttaccgaggaacaaaacaacaagctgctcttgaca
accgtcgggaagctcattttcaacgaaattttgccgaagtcgttcccgtacattaacgag
ccgacgacggaaaatattgaagggcggacaccggataagtacttcctggacaaaggggtc
gacgtgcgtgaagagatccgcaagcgcgaactcgtgccgccgtttaagaaaaaagtgctt
gggcaaattatcgccgaagtattcaagcggttcaaaattactgaaacatcaaagatgctt
gaccgcatgaaagatctcggtttccaatactcaacgaaagccggcattacgatcggcgtt
gccgacatcgtcgttttgccggaaaaacaggaaattttggatgaagcccaggcgaaagtc
gacacggttttgaagcagttccgccgcgggttgattaccgacgaagagcggtatgagcgc
gtcatctctgtttggagcgcggcgaaagataaaatccaagacttgttgatgaagtcgctt
gataagcgcaacccgatctttatgatgagcgattctggggcgcgcggtaacgcctcgaac
tttacacagcttgcggggatgcgcggcttaatggccaaccctgccggccggattatcgag
ctgccgatcaaatcgtcgttccgtgaaggcttaacggtattggaatactttatctcgaca
cacggcgcgcggaaagggttggcggatacggcgttgaaaacggccgactcaggctatctc
acgagacgtctcgttgacgtggcgcaagatgtcatcgtccgcgaagaagattgtggcacc
gaccgcggcattttagcgcgggcgttaacggatggcacggaagtcgtcgtcaagcttgaa
gaacggcttgtcggccgctatgcgcacaagacggtgcaccatccggaaacgggggaagtg
atcgtccgcaaaggtgaaatgattacagaagatatcgctaatgagatcatcaaggccggc
attacagaagtatggattcgctccgtcttcgcctgcaacacgcgtcatggcgtgtgcaaa
aaatgctacggccgcaacatggcgaccggcatggacgtcgaagtcggcgaggcggtcggc
attatcgctgcccaatcaatcggcgagccgggcacgcagctgacgatgcggacgttccat
acaggcggcgtcgccggggacgatatcactcaaggtttgccgcgggtgcaagagctgttt
gaagcgcgcaacccgaaagggcaagcggtcatttcggaaattgacggcacggtcatttcg
attaatgaaacgcgtgacaatcagtacgaaattgtcgtgcaaagcgaagtcgagacgcgc
tcctatgtggctccgtacaatgcgcgtctgaaagtcgaagaaggccagcacgtcgaacgc
ggccaagagctgacggaaggttcggtcgacccgaaacagctgttgcgcgtgcgcgatatt
acgtccgtccaagaatacttgctccgtgaagtgcaaaaagtgtaccggatgcaaggggtc
gaaattagcgataagcatattgaggtcatggtgcggcaaatgttgcgcaaagtgcgcgtg
atcgatgccggcgatacggatgtgctgccaggcacgcttttggacgttcatcagttcacg
gatgtcaacgctcaagccatccgcgaaggaaagcggccggcaacagctcgtccggtgctg
ctcggtattacgaaggcgtcgcttgaaacggattcgttcttgtcagcggcttcgttccaa
gaaacgacacgcgtcctgaccgatgcggcgatcaaaggaaaacgggatgagctgctcggc
ttgaaagaaaacgtcattatcggcaaactcgtcccagccggaacaggcatggcccgctat
cgcaacgtgaagcctgccgtcaagaaggaaacggctggcgataccgttccgtctaaataa
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integrated database retrieval system
