Gallibacterium salpingitidis: NYR30_00730
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Entry
NYR30_00730 CDS
T09222
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gss
Gallibacterium salpingitidis
Pathway
gss03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gss00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NYR30_00730 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gss03021
]
NYR30_00730 (rpoC)
03400 DNA repair and recombination proteins [BR:
gss03400
]
NYR30_00730 (rpoC)
Enzymes [BR:
gss01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NYR30_00730 (rpoC)
Transcription machinery [BR:
gss03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NYR30_00730 (rpoC)
DNA repair and recombination proteins [BR:
gss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NYR30_00730 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WKS99859
LinkDB
All DBs
Position
138165..142394
Genome browser
AA seq
1409 aa
AA seq
DB search
MKDLVKFLKTQSKSREDFDVIKIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQAKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFESYIVIEPGMTDLEKGQLLTEEQFLDAEERWGDEFEAK
MGAEAIQALLRDMDLEHQCETLREELQETNSETKRKKITKRLKLLEAFIQSGNKPEWMVL
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFRPFIYAKLESRGLASTIKAAKKMVEREDAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNILSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMLLQDPREAEKAYRT
GEAELHSRVKVRITEYEKNAQGEFEAKTTLTDTTVGRAILWMIAPKGMPFSLFNQTLGKK
AISRLINESYRRLGMKDSVIFADQIMYTGFAYAARSGSSVGIDDMVIPEKKYEIISSAEE
EVAEIQEQFNSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVVNRNGELEKQSSF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVVVEDDCGTHEGIVMTPLIEGGDEKVSLRELV
LGRVTAEDVLNPGTEEVLIPRNTLLDEKWCEVIDKHSVDSIKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNTGTIR
LTNAKFVTNQDGKLVITSRNTELTVIDTFGRTKEHYKLPYGSILNKANGDDVTAGETVAN
WDPHTMPVVSEAKGFVKFVDIIDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALK
LVDANGNDILIPGTEVPAQYFLPGKAIVTLDDNAEVNIGDSLARIPQESSGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLVITPSEGEAYEEMIPKWRQLNVFE
GEMVQRGDIISDGPESPHDILRLRGVRAVTEYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKCVITNAYDSEFLKGEQVEVARVKVVNRKRAAEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQSRAKKRHAAAMNA
NAAVVEEPTISAEEAVANLAEMLNMNEAE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaaacacaatcaaaatctcgtgaagactttgatgtg
attaaaattggtctagcttctccagacatgattcgttcatggtcttatggtgaagtgaaa
aaaccagaaactatcaattatcgtaccttcaagcctgaacgcgatggtctattctgtgcc
agaattttcggaccagtgaaagattacgaatgtttatgtggtaaatataaacgtttgaaa
catcgtggcgtgatttgtgaaaaatgtggtgttgaagttactcaagctaaggtacgtcgt
gaacgtatggggcacattgagttagcctctcctgttgcacatatttggttcttaaaatca
ttaccatctcgtatcggtctattgttagatatgccattacgtgatattgagcgtgttctt
tattttgaatcatacattgtgattgaaccaggtatgacagatcttgaaaaaggtcaatta
ttaactgaagaacaattcttagacgcagaagagcgttggggcgatgagtttgaagcgaaa
atgggtgcggaagcaatccaagctttacttcgtgatatggatcttgagcaccaatgtgaa
acattacgtgaagagttacaagaaactaattcagaaactaaacgtaaaaaaatcactaag
cgtttaaaattattagaagcatttattcaatctggtaataaaccagagtggatggtatta
actgtattaccagtattaccaccagatttacgtccattagtaccacttgatggtggtcgt
tttgcgacatcagatttgaatgatctttatcgtcgtgtgatcaaccgtaacaatcgttta
aaacgtcttttagacttaattgcgccagatattattgtgcgtaatgaaaaacgtatgtta
caagaatctgtagatgcgttattagataatggtcgtcgtggtcgtgcgattactggttca
aataaacgtccattaaaatcattagcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgttgactattcaggtcgttctgtaattaccgtaggtcca
tatttacgcttacatcaatgtggtttaccgaagaaaatggcattggaattattccgtcca
tttatctatgcaaaattagaaagtcgtggtttggcatcaaccattaaagcggcgaagaaa
atggttgaacgtgaagatgcaatcgtatgggatattttggcagaagttattcgtgaacat
ccaattctgcttaaccgtgcaccgacacttcaccgtttaggtattcaagcatttgaaccg
atcttaatcgaaggtaaagcgatccaattgcatccattagtttgtgcggcgttcaacgcg
gacttcgatggtgaccaaatggcggttcacgtgccattgacattagaagcacaattagaa
gctcgtgcattaatgatgtcaaccaacaacattttatcaccagcaaacggtgatccgatt
atcgtaccatctcaagacgtggtattaggtctttactatatgactcgtgaaaaagttaac
ggtaaaggcgaaggaatgttgttacaagatccacgtgaagcagaaaaagcatatcgtact
ggtgaagctgaacttcattctcgtgtgaaagtacgtattactgaatatgagaaaaatgca
caaggtgaatttgaagcgaaaaccactttaactgatacgactgttggtcgtgcgatttta
tggatgattgcacctaaaggtatgccatttagtctattcaaccaaactttaggtaagaaa
gcgatttctcgtttaattaacgaaagctatcgtcgtttgggaatgaaagacagcgttatc
tttgctgaccaaattatgtacactggttttgcttatgctgcacgttctggttcatcagtt
ggtattgatgatatggtgattccagagaagaaatatgaaattatttcttcagcagaagaa
gaagtagcagaaattcaagaacaatttaactctggtttagtaaccgctggcgaacgttat
aacaaagttatcgatatttgggcagcagcgaatgaacgtgttgcgaaagcgatgatggaa
aacctttctactgaagaagtggtaaatcgtaacggcgaactcgaaaaacaaagctcattt
aacagcatctttatgatggctgattcaggggcgcgtggttctgcagcacagattcgtcag
cttgctggtatgcgtggtttgatggctcgtccagatggttcgatcattgaaacccctatt
acagcaaacttccgcgaaggtctaaacgttcttcaatactttatttcaacccacggtgca
cgtaaaggtttggcggataccgcgttgaaaactgcgaactcaggttatttaactcgtcgt
ttagttgacgtagcacaagaccttgtagtggtagaagatgactgtggtacacacgaaggt
atcgtgatgacaccattaattgaaggtggtgatgaaaaagtcagcttgagagagttagta
ttaggacgtgtaactgcagaagatgtattaaatccaggtacagaagaagtgttgattcca
cgtaatacactattagatgaaaaatggtgtgaagtgattgataaacactctgttgatagc
atcaaagtacgttcagttgtaacttgtgatactgattttggtgtgtgtgcgaaatgttat
ggtcgtgaccttgcacgcggacacttaattaaccaaggtgaagcaatcggggttattgca
gcgcaatcaatcggtgagccaggtacacagttaaccatgcgtacattccacattggtggt
gcagcgtctgcagctgcgaaagaatcaagtgttcaagtgaagaataccggtactattcgt
ttaactaatgcgaaattcgtaactaaccaagacggtaaacttgtaattacttctcgtaat
actgagttgactgtgattgatacttttggtcgtactaaagagcactataaattgccatat
ggttctattttaaataaagctaatggcgatgatgtaactgcaggtgaaactgtagcgaac
tgggatccacatacaatgccagttgtttctgaagcaaaaggttttgtgaaatttgtcgat
attattgatggtttaactgttactcgtcaaactgatgaattaacaggtctttcatcgatc
gtggtacaagatgttggtgaacgtgcgactgcaggtaaagatttacgtccagcattgaaa
cttgttgatgctaacggtaacgatattttaattccaggaacagaagtgccagcacaatac
ttcttacctggtaaagcaattgttactttagacgataatgcagaagttaatatcggggat
tctttagcacgtattccacaagaatcatcaggtactaaagatattaccggtggtttacca
cgtgttgcagatttatttgaagcgcgtaaaccaaaagagcctgcaattttggcagagatt
tctggtatcgtttcatttggtaaagaaactaaaggtaaacgccgtttagtaattactcca
agtgaaggtgaagcatacgaagaaatgattccaaaatggcgtcaactcaacgtatttgaa
ggtgaaatggtacaacgcggtgatattatttctgatggtccggaatctccgcatgatatc
cttcgtttacgtggtgtacgtgcagtaaccgagtatatcgtgaatgaagtacaagatgtt
taccgcttacaaggggtaaaaatcaatgataaacacattgaagttatcgtacgtcaaatg
ttacgtaaatgcgtgattaccaatgcgtatgattcagagttccttaaaggtgaacaagtt
gaagttgcgcgcgtgaaagttgttaaccgtaaacgtgcagcagaaggtaaaccgttagtt
gaatttgaacgtgaattactcggtattactaaagcttcattggcgacagaatcatttatt
tctgcggcatcattccaagaaacaacacgagtgcttactgaagcagcggttgctggaaaa
caagatgaattacgtggcttgaaagaaaacgtaatcgtaggtcgcttaattcctgctggt
acaggttttgcttatcaccaaagcagagcgaaaaaacgtcatgcagcagcaatgaatgcg
aatgcagcagttgttgaagagccaacaatcagtgctgaggaagcagtagcaaacttagca
gaaatgttgaatatgaatgaagcagaataa
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