Gallibacterium salpingitidis: NYR30_02110
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Entry
NYR30_02110 CDS
T09222
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
gss
Gallibacterium salpingitidis
Brite
KEGG Orthology (KO) [BR:
gss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gss03016
]
NYR30_02110 (rnb)
Enzymes [BR:
gss01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NYR30_02110 (rnb)
Transfer RNA biogenesis [BR:
gss03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NYR30_02110 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
DUF2274
Motif
Other DBs
NCBI-ProteinID:
WKT00120
LinkDB
All DBs
Position
complement(439049..441034)
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AA seq
661 aa
AA seq
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MFQDNPLLSQLKQQIRDSKPHIEGVVKATDKAYGFLEGEKKSYFIPPQAMKKVMHGDKIK
AVIETVGDKEQAEPDSLIEPMLTRFIARVRFNKDNKLQLLVDHPNIKQSISANVHKKVTE
TLANGDWVVAELKTHPLRDDRFFFAQVTQFICHQDDPKTAWWVTLARHQQPRTVVAGLTT
YPFEETEIRQDLTALDFVTIDSETTEDMDDALFITPIVQEGTQTGWKLAVAVADPTAYIP
LDSQIETDAKQRCFTNYLPGFNIPMLPRELSDDLCSLVEGEKRPALVCFIETDLQGAVIA
EPTFTLAWICSKAKLAYDAVSDYLEQLPNAWQPSNDTVKDQIEALHQFSLARITWRQQHA
ILFKDRPDYNFILADDGAITEIRADYRRIANRIVEECMIIANTCAAQFLTAHQAAGIFNT
HSGFDKKFLPAASQFLLNHLANEQNQTELSQRYSVETLTTLAGYCQMQHDLDQQPQEYLE
TRLRRYLTFAEFKAEAAPHFGLGLNAYATWTSPIRKYCDMVNHRVIKAILSQQPLPQVEE
NVLVRLQEARKQNRLVERDIADWLYCIYLADKVAEKTVYQAQIVDITRGGLRVQLIENGA
SVFVPMSLLHDKKEEIEVNSDDIALYIQGKRHYQLADILSIQLIEVNLETRSIVGTPASE
Q
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagataatcctctcctcagtcaactcaaacaacaaattcgcgatagtaaacct
catattgaaggcgttgtaaaagcaaccgataaagcatatggctttttagaaggcgaaaag
aaaagttactttattccgccacaagcaatgaaaaaagtcatgcatggcgacaaaattaag
gctgttattgaaacagttggtgataaagagcaagccgaacctgacagcttaattgaaccg
atgctgacacgctttatcgctagagtacgtttcaataaagataacaaattacaactacta
gtcgatcatccaaatatcaagcaaagtatttcagctaatgttcacaaaaaagtcactgaa
actttagcgaatggtgattgggtagtcgcagagctgaaaacacatccattacgcgatgat
cgttttttctttgcacaagtaacacaatttatctgtcatcaagatgatccaaaaaccgct
tggtgggtaactttagctcgccatcaacaacctcgcactgtcgttgctggtttaactacc
tatccgtttgaagaaactgaaattcgacaagatcttaccgcattagatttcgtaacgatt
gactcagaaactactgaggatatggacgatgcgttatttatcacgccaatagtgcaagag
ggaacgcaaactggatggaaactagcagtggcagtagccgatccaaccgcctatattcca
ttggattcacaaattgaaacagatgccaaacaacgttgttttaccaactatttgccaggt
tttaatattccaatgctgccacgagaactctctgacgatctctgctcattggttgaaggc
gaaaaacgccctgcattagtttgctttatcgaaacagatctacaaggtgcagtcattgct
gaaccaacttttacgttggcatggatctgttctaaagcaaaattagcttatgatgcggtt
tccgattatttagaacaattaccaaatgcgtggcaaccgagcaatgatacggtaaaagat
caaatcgaagcattacatcaattcagtcttgctagaattacttggcgccagcaacatgcg
attttgtttaaagatcgccctgactataactttattctcgcagacgatggtgcaataact
gaaattcgtgctgattatcgtcgtattgccaatcgtattgttgaagaatgtatgattatt
gccaacacttgtgcagcgcaattcctaacggcacatcaagcagccggtattttcaacact
cacagtggttttgataagaaattcttaccggcagcaagccaattcttattaaatcattta
gccaatgaacaaaatcaaactgaattgagtcaacgttatagtgtagaaacgctaacaact
ttagctggttattgccaaatgcagcacgatcttgaccaacaaccgcaagagtatttggaa
actcgtttacgccgttatctaacttttgccgagtttaaagcagaagctgcaccacacttt
ggtttagggttaaacgcttatgcgacttggacttcaccaattcgtaaatattgcgatatg
gtcaatcatcgcgtaattaaagcaattttaagccagcaacctttaccacaagtcgaagag
aacgtgttagtgcgtttacaagaagcgagaaaacaaaatcgtctagtcgaacgtgatatt
gctgattggttgtattgtatctatcttgcggataaagttgctgaaaaaactgtttatcaa
gcacaaattgttgatattacgcgtggtggtttacgagtacaattaatcgaaaatggcgct
agtgtttttgtaccaatgtcgttattacacgacaaaaaagaggaaattgaagtcaatagt
gatgatattgctctctatattcaaggtaagcgtcattatcaacttgctgatattctctct
atccagttaattgaagtaaatcttgaaactcgcagcattgttggtacgccagcaagtgaa
caatag
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