Gallibacterium salpingitidis: NYR30_06505
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Entry
NYR30_06505 CDS
T09222
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gss
Gallibacterium salpingitidis
Brite
KEGG Orthology (KO) [BR:
gss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gss03016
]
NYR30_06505 (rnd)
Enzymes [BR:
gss01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NYR30_06505 (rnd)
Transfer RNA biogenesis [BR:
gss03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NYR30_06505 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
WKT00917
LinkDB
All DBs
Position
complement(1379230..1380363)
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AA seq
377 aa
AA seq
DB search
MQNLSIPYQIIQNNQQLQQLCQAAQQHPVVALDTEFERIRSYYAKLGLIQLYYGEQVALI
DSLTITEWQPFIALLTNQQVIKVLHASGEDIEIFYQQFGQLPQPLMDTQIAANFLGFPLS
AGFALLVEHYLQVQLDKKMSRTDWLKRPLSDRQLQYAAADVYYLLPVYQQMAATMQNSQW
AEVIKQECQFVAEKRCKQPIPERAYLDIGNAWRLNREELNNLKFLAKWRLQEGIKRNLAL
NFIVSNEGLVQTAIHAPKHTSQLLELGLHPMEIKHHGKKLLLLIEQAKRVPAEEYPELIE
NISERSGYKKQMNGLQKTLKQLVKDQLPQQVVASKKALHQLLKWYWSGQPQERLPELLQS
WRRPYGEALLNSLQPKE
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacttatcaattccataccaaattattcagaataaccaacaattacaacaacta
tgtcaagctgcccaacaacatcctgttgtggcgttggataccgagtttgaacgaattcgt
agctattacgctaaactcggcttaattcaactctattatggtgaacaggttgcattaatt
gattcattgacgattaccgagtggcagccttttattgcattattaacgaatcaacaggta
attaaagtcttacacgccagtggcgaagatatcgaaattttttatcaacaatttggacaa
ctaccgcaaccattgatggatacacaaattgcggcaaattttttaggttttccgctttct
gcaggatttgctcttttggtcgaacattatttacaagtgcaattagataaaaaaatgtca
cgtactgattggttaaaacgtccattgagtgatcgtcaattacagtatgcagcggctgat
gtctattatttattacccgtttatcaacaaatggcagctacgatgcaaaactcgcaatgg
gcagaagtgatcaagcaagagtgccaatttgtggcggaaaaacgttgcaaacaaccaata
ccagaacgtgcttatttggatattggtaacgcgtggcgccttaatcgagaggaactaaat
aatttaaaatttttagcaaaatggcgtctgcaagagggaataaaacgaaatttagcgctt
aattttattgttagtaatgaaggattggtgcaaaccgcaattcatgcaccgaaacacacc
tcgcaattgctggaattaggcttgcatccaatggaaatcaaacatcatggtaaaaaactt
ttacttttgattgagcaagcgaaacgtgttcctgcggaagaatatccagagctgattgag
aatatttcagaacgttctggttataaaaaacagatgaatgggttacaaaaaaccttaaaa
caacttgtaaaagatcaattaccgcagcaagtggtagcgagtaaaaaagcgttacatcaa
ctgttgaaatggtattggtctggacaaccgcaagaacggttaccagaattattacaatct
tggcgtcgtccttatggggaagctttgttaaatagtttacagcctaaggagtaa
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