Gallibacterium salpingitidis: NYR30_12260
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Entry
NYR30_12260 CDS
T09222
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gss
Gallibacterium salpingitidis
Pathway
gss03420
Nucleotide excision repair
gss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NYR30_12260 (uvrD)
03430 Mismatch repair
NYR30_12260 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gss03400
]
NYR30_12260 (uvrD)
Enzymes [BR:
gss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NYR30_12260 (uvrD)
DNA repair and recombination proteins [BR:
gss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NYR30_12260 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NYR30_12260 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
DUF3553
Motif
Other DBs
NCBI-ProteinID:
WKS99471
LinkDB
All DBs
Position
2568869..2571037
Genome browser
AA seq
722 aa
AA seq
DB search
MDFSELLDGLNDRQREAVAAPLGNYLVLAGAGSGKTRVLTYRIAWLIGVEGVSEASIMAV
TFTNKAAAEMRHRIEDLLKDHIQPPFGMWVGTFHSLAHRLLRRHALDAGLPQDFQILDSE
DQLRLIKRLIKSYNIDEGLYPPKQACWFINNKKDLGLRPEQIETKDAESRKWVEIYQIYQ
DACDRAGLVDFAELLLRTYELWLKKPLILQRYQQRFQHILIDEFQDTNNIQYNWVKLLAG
QTGKVMIVGDDDQSIYGWRGAQVENIHRFLTDYRADTIRLEQNYRSTENILQSANILIAN
NEGRLGKNLWTEGNKGEPVGIYQAFNEQDEARFVTSQIKQWVEDGGSYDQCAVLYRSNRQ
SRVLEEALIQAGLPYRIYGGLRFFERQEIKDALGYLRLISNRQDDVAFERVINTPTRGIG
DRTVDILRQIARQQSIPLWEATHLAIDEKLVQGRASSALLRFIELINALETDTEAMSLSE
QTEFVIKHSGLQEMYKNEKGEKGEVRLENLEELVFAAKDFQKPDEAEEMSDLLAFLTHAS
LEAGEGQASPHQQCIDLMTLHSSKGLEFDRVFIVGMEEGLFPSGISSGEEGRLEEERRLA
YVGITRAKKKLTLCYAEQRRIYSQEEKRIVSRFINELPKENIQEIRLRGTVTRAINREAV
GSAKPLFANQDWKLGQKVKHAKFGYGTVINIEGSEANVRLQVAFQNQGIKWLIAKLANLE
KL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcagaattattagatggtttaaatgatcgccaacgtgaagcagttgcggca
ccattaggcaactatttagtgttagcaggcgccggcagcggtaaaaccagagtgctcacc
tatcgtatcgcttggttaattggtgttgaaggtgtaagtgaagcctcaattatggcggtt
acctttaccaataaagccgctgcagaaatgcgtcatcgtattgaagacttattaaaagat
catatccagcctccttttggaatgtgggttggtactttccatagtttggcgcaccgttta
ttgcgccgccatgccctagacgcaggcttaccacaagatttccaaattcttgattctgaa
gatcaattacgtttaattaaacgcttaatcaaatcttataatattgatgagggtttatat
ccgccgaaacaggcttgttggtttattaataacaaaaaagatctaggtttacgtccagaa
caaatcgaaaccaaagatgcagagtcgcgcaaatgggtggaaatttatcaaatttatcaa
gatgcgtgtgatcgtgcaggtttggtcgattttgccgaactattactgcgtacgtacgaa
ttatggctgaaaaaaccattaatcttgcagcgttatcaacaacgtttccaacatattctg
atcgatgaattccaagataccaacaatatccaatacaattgggtaaaattactcgcagga
caaactggcaaagtgatgattgttggtgatgacgatcaatctatttatggctggcgtggt
gcacaagtggaaaatatccaccgttttcttactgattatcgtgcagacacaatccgccta
gaacaaaactatcgctcaacagaaaatattctgcaatcagctaatatccttatcgctaat
aatgaagggcgcttaggtaaaaatctttggactgaaggtaataaaggtgaacctgttggt
atttaccaagcattcaatgaacaagatgaagctcgttttgtcacttcacaaatcaaacaa
tgggttgaagatggtggcagttatgatcaatgtgcggtgttatatcgtagtaaccgtcaa
tcacgcgtattagaagaggcgttaattcaggctggattaccttaccgtatttatggtggc
ttacgcttctttgaacgccaagaaattaaggatgctttaggctacttacgtttaatctca
aatcgccaagatgacgttgcgtttgaacgtgtgattaataccccaacacgcggtattggt
gatcgtactgtagatattctgcgtcaaattgctcgtcaacaatctatcccactttgggaa
gcaacacatttagcaatcgatgaaaagttagtacaagggcgtgcttcttccgctttatta
cgctttatcgaattaattaatgcgttagaaacagatactgaagcaatgtcactatctgaa
caaaccgaatttgtgattaaacactctggcttacaagagatgtataaaaatgaaaagggt
gagaaaggagaagtacgcttagaaaacttagaagagctcgtttttgctgcaaaggatttc
caaaagcctgatgaagcagaagagatgagcgatttacttgctttcttaacccacgcttca
ttagaagcaggtgaaggacaagcttcaccgcatcaacaatgtattgatttaatgacatta
cactcttctaaagggcttgaatttgatcgtgtctttattgtgggtatggaagaaggttta
ttcccaagtggcatttcttctggtgaagaggggcgactcgaagaagaacgccgtttagct
tacgttggtatcacacgagcaaagaaaaaattaaccttatgctatgctgagcaacgtcgt
atttattctcaagaagaaaaacgcattgtatctagatttatcaatgaattaccaaaagaa
aatattcaggaaattcgtttacgtggtacggttactcgtgcaatcaatcgtgaagcggtt
ggctctgccaaaccattgtttgcaaatcaagattggaaactaggacaaaaagtgaaacac
gccaaatttggttatggcactgttattaatattgaaggcagtgaagcaaacgtgagatta
caagtcgcatttcaaaatcaaggaattaaatggctaatcgctaaattagccaacttagaa
aaattgtga
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