Bacillus sp. X1(2014): HW35_04380
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Entry
HW35_04380 CDS
T03242
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
gst
Bacillus sp. X1(2014)
Brite
KEGG Orthology (KO) [BR:
gst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gst03019
]
HW35_04380
03009 Ribosome biogenesis [BR:
gst03009
]
HW35_04380
Enzymes [BR:
gst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HW35_04380
Messenger RNA biogenesis [BR:
gst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HW35_04380
Ribosome biogenesis [BR:
gst03009
]
Prokaryotic type
rRNA helicases
HW35_04380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
AAA_22
DUF3545
Motif
Other DBs
NCBI-ProteinID:
AIM15629
LinkDB
All DBs
Position
complement(813018..814325)
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AA seq
435 aa
AA seq
DB search
MNKFERFHFQPFIMEALNSLGFYEPTEIQERMIPLIMKGESAIGQSQTGTGKTFAYVLPI
LEKINPDKKEVQAVITAPTRELASQIYDQILRVTDHCQPEQSIMTRLFVGGTDKQRTIEK
LKVQPHIVVGTPGRINDLVNERALFVHTSNILVVDEADMMLDMGFIEDVDRVAAKMPENL
QMFVFSATIPEKLKPFLKKYMENPKTIHIDPKRKSQANLEHYLLPSRHRDKKELVYDALL
AYNPYLAIVFVNTKKMAEEVAQFLYEKGLKVGRVHGDLTPRERKKMMKQIRVLEYQYIVA
TDLASRGIDIEGISHVINYELPSDLDFYIHRVGRTARAGNAGVALTIYDLSDEDALNRLE
KMGIRFKNVDLKNGEFIEIDHRNRRKTRVKPEDETDQLVRAVIKKPKKVKPGYKKKMQYE
IEKMKKRQRRLKKKK
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacggtttcattttcagccattcattatggaggcgttaaatagttta
ggtttttatgaaccaacagaaattcaagaacgtatgattccattgatcatgaaaggagaa
agtgcgattggtcaatcccagacgggaactggtaaaacatttgcttatgttctgcctata
ttagaaaaaataaatccggataaaaaagaagttcaggctgttattacagccccaacaagg
gaactagcctctcaaatttatgaccaaatcttaagggttacagatcattgccaaccggaa
caatccattatgaccagattgtttgtggggggaacggacaagcagaggacgatagagaaa
ttaaaggtacaaccgcatattgttgttgggactcctggtcgaattaatgatttagtgaat
gaacgggctttgtttgtacatacctctaatattttggttgttgatgaagcagatatgatg
cttgatatgggatttatcgaagatgtggacagggttgctgcaaaaatgccggaaaaccta
caaatgttcgtattttcagcaacgataccagaaaaacttaaaccatttttaaaaaaatat
atggaaaatccaaaaacaattcatattgatccgaaaagaaagtcccaagcgaatttggag
cattatctgctgccatcaagacatcgcgataaaaaggaacttgtctatgatgctcttctt
gcctacaacccttatttggccattgtatttgtgaatacgaaaaaaatggcagaagaagtg
gcccagttcttatatgaaaagggcttaaaagtagggcgtgtccatggcgatttaactcca
agagaaagaaaaaaaatgatgaagcaaatccgagttttggagtaccaatatatcgtagca
accgaccttgcttctaggggaattgacatagaagggattagccatgtcattaactatgag
ttaccttccgatttggatttttatattcacagagttggcagaacggcaagggcaggtaat
gctggggttgcattaaccatttatgatttatcagatgaggatgcattgaaccgcttggaa
aaaatgggaattcggtttaaaaatgttgatttgaagaatggagagtttattgagattgat
catcgaaatcgccgtaaaactcgcgtaaagccagaggatgagacagatcagttggtaaga
gctgtgataaaaaaaccgaaaaaagtaaaaccgggttataaaaagaaaatgcagtatgaa
atagagaaaatgaaaaaacggcagcgaagattaaaaaagaagaaataa
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