Bacillus sp. X1(2014): HW35_04910
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Entry
HW35_04910 CDS
T03242
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gst
Bacillus sp. X1(2014)
Pathway
gst03410
Base excision repair
gst03430
Mismatch repair
gst03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HW35_04910
03430 Mismatch repair
HW35_04910
03440 Homologous recombination
HW35_04910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gst03400
]
HW35_04910
DNA repair and recombination proteins [BR:
gst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HW35_04910
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HW35_04910
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HW35_04910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AIM15729
LinkDB
All DBs
Position
complement(918096..920447)
Genome browser
AA seq
783 aa
AA seq
DB search
MLKSRTRWIVRKSDPVLVKQFEKELKITPLVASLLVNRGFDTVDSARFFLFGKDEFHDPF
LLKGMDIAVNRIREAIERKEPILIFGDYDADGVSSTSVLMKTLTDLGADVQFYVPNRFTE
GYGPNEPAFRRAAENGIKLIITVDTGISAIHEASVAKELGLDLIITDHHEPGPVLPEALA
IIHPKLPDSIYPFRDLAGVGVAFKLAHALYGRLPEHLLELALIGTIADLVPLKGENRLIA
KKGLENIKVTNNIGLKTIFKLAGVEPLSINEETIAFTLGPRINAVGRLEDATMAVQLLLT
NDENEAKELAEEMEALNRERQAIVNLITEEAINEVERNYPIETNKVLVLGKEGWNAGVIG
IVASRLVEKYYRPTIVFSFDREKGVAKGSARSIPGFDLFQNLSTCRDILPHFGGHPMAAG
MTLSIDDVGELRERLNGLANDQLTDEDFIPVTYLDEEVQINDIDLESLDELNLLSPFGVE
NAKPMVLINDVDITSIRKIGSDQNHLKIVVNKNGNSLDGIGFGLGSLVDEISPAAQISLI
GELSINEWNNIRKPQIFVHDLSVDTWQLFDFRGQNRLNSIETLVPNENRKIIVFNKDNLD
KISATLHDEVYLIENKEDAKSFNAHMANIVFADFPPSKELIIHLLSGKHPSRIYTYFYKE
SSDFFSTMPTRDHFKWFYAFLMQKGPIDLKRYGADIAKHRGWSQETITFMSKVFSELDFV
TINNGFITLKRQTQKRDLTESKTYQIKQAQNALERDLLFSSFQELKDWFDKVLFESVELE
EAF
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagtcaagaacaagatggattgttcgtaaatcagatccggttttagtaaagcaa
ttcgaaaaagaattgaaaattactcctctagttgcatcactccttgtcaatcgtggattt
gataccgttgattctgcacggttttttttatttggtaaggatgaatttcacgatccattt
ttgttaaaaggcatggatattgcggttaatagaatccgtgaggcgatcgaaaggaaggaa
ccaatccttatttttggtgattacgatgccgatggtgttagtagtacgtcggtattaatg
aagacattaacagatttaggtgcggatgtacaattttatgttcccaatcgatttacagaa
ggctatggtccaaatgagcctgcttttcgtcgggctgctgaaaatgggatcaaattgatt
attaccgttgatacaggaatctctgccattcatgaagcaagtgtggcgaaagagcttggc
cttgacttaattataactgaccaccatgagccaggacctgtattgcctgaggcgcttgcg
attattcatccaaaacttcccgatagtatttatccctttcgtgatctagctggggttgga
gtagcgttcaaattggctcatgccttatatggaagactgccagagcatttgttggaattg
gctcttattggcacaatagctgatttagtcccattaaaaggggaaaatcgattaattgcc
aaaaaaggtcttgaaaacattaaagtaactaacaacattggcttgaaaacaatatttaaa
ttagctggtgttgaaccattatccattaacgaagaaaccatcgcctttacactaggtccg
aggattaatgctgtaggcaggttagaagatgctaccatggcagtccaattgctattgacc
aatgatgaaaacgaggcaaaagaattggctgaagaaatggaggctcttaatcgagaaaga
caagctattgtcaacttgattaccgaagaagcgatcaacgaggtagaacgaaattatcca
atagaaacgaataaggttcttgtccttggcaaggagggctggaatgcaggtgttattgga
atcgttgcttccagattggttgagaaatattaccggccaacgattgtcttcagttttgat
cgtgaaaaaggggtggcaaaaggttcggcaagaagcattcctggatttgacttgtttcaa
aatttatccacttgtcgtgatatcttgccccacttcggcggacatccaatggctgcgggg
atgacattaagtatagatgatgttggtgagcttagagaaagattaaacggtctggcgaat
gaccaacttacggatgaagattttattccggttacctatctagatgaagaagtccagatc
aatgatattgatttagagtcattggatgaattaaatctgttatcaccttttggagtagag
aatgctaaaccaatggtattaatcaatgatgttgatataaccagtattaggaaaatcggc
agtgatcaaaatcatttgaagattgtagtaaacaagaatggaaatagccttgatggaatt
ggctttgggttaggctctttagtcgacgaaatttcaccggcagcccaaatttcattaata
ggtgaattgtccattaatgaatggaataatatacgaaaaccacaaatatttgttcatgat
ctatctgtagacacttggcagctgtttgatttccgtggccaaaatagactaaatagtata
gagaccttggtacctaatgaaaataggaagattattgtttttaataaagacaatctggat
aaaataagcgcaactctgcatgatgaggtctatctgattgaaaacaaagaagatgcaaaa
tcgtttaacgctcatatggcaaacattgttttcgcagatttccctccttcaaaagaattg
atcattcatttacttagtggaaaacatccatcgagaatttatacttatttttataaggaa
tctagtgatttctttagcacaatgccaacacgggatcattttaaatggttttatgcattt
ttaatgcaaaaaggaccaattgatttaaagcgttatggtgcagacattgcaaagcatcga
ggctggtctcaagaaacgatcacttttatgtcgaaggtgtttagtgaactggattttgtt
acaataaacaatggttttattactttaaaaaggcaaacacagaagcgtgatttgaccgag
tcaaaaacttatcaaataaaacaggcacagaatgccttagagagagatttattgttttcg
tcctttcaagaattaaaggactggttcgataaagttttatttgagtcggtcgaacttgag
gaggcattttag
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