Gavia stellata (red-throated loon): 104251071
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Entry
104251071 CDS
T08384
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104251071 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gste03041
]
104251071 (SF3B1)
03036 Chromosome and associated proteins [BR:
gste03036
]
104251071 (SF3B1)
Spliceosome [BR:
gste03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104251071 (SF3B1)
Complex B
104251071 (SF3B1)
Complex C
U2 SnRNP specific factors
104251071 (SF3B1)
Chromosome and associated proteins [BR:
gste03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104251071 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
104251071
NCBI-ProteinID:
XP_009816867
LinkDB
All DBs
Position
Unknown
AA seq
1340 aa
AA seq
DB search
MAWAVAKRCVDVVLTEKNAPKEGKKQREVSSISAGTSAQSSCRLGVYVDIEAQIREIQGK
KPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYPSTSLLGQKKP
GYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKKHRRMMIISPERLDPFADGGKT
PDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAASQPPSKRKRRWDQT
ADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPA
GAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIG
ETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQ
AWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGF
HMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKI
KNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLD
DLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYV
RNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLR
SLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLA
AFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEAN
YIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQY
RKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKR
VKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGE
EYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD
RGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQ
ERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKD
YIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSP
HVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHY
PRIYNDEKNTYIRYELDYIL
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atggcctgggctgttgctaagcgttgtgttgacgtggtgcttactgagaaaaatgccccg
aaggaagggaaaaaacagcgtgaggtctcaagcatttcagctggcacttcagcacagagt
tcctgccggctgggtgtttacgtagatattgaagcacaaattcgagagattcaaggaaaa
aagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattacgatcaa
gaaatttatggtggcagtgacagcaggtttgctggatatgtcacttctattgcagcaact
gaattggaagatgatgatgatgactacccttctacaagtttgcttggccagaagaagcca
gggtaccatgctccagtggcattgcttaatgacataccacagtctactgaacagtatgat
ccttttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaagcac
aggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaagaca
ccagatcctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcatttaaca
aaggaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagcttaaa
gtcgtcaatggagccgcatctcagccaccttcaaaacgcaaacggcgttgggatcagaca
gctgatcagactcctggtgctacacctaaaaaactgtctagctgggatcaagcagagact
cctggacatacaccatctctgcgatgggatgaaactccaggccgtgcaaagggtagcgaa
acgcctggtgccaccccaggctcaaaaatatgggatccgactcccagtcatacaccagca
ggagctgcaacacctggacgggacacacccggtcatgcaacacctggccatggaggtgcc
acttccagtgcacgtaaaaatcgatgggatgaaacacctaaaacagaaagagatactccg
ggacatggcagtggatgggctgagacacctcgtacagatagaggtggtgactccattggt
gagacaccaaccccaggagcaagtaaaagaaagtcacgatgggatgaaacacctgctagc
cagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacaccagct
atgaacatggcaactcctacaccaggtcatatcatgagcatgactcctgaacagctgcag
gcttggcgttgggaaagggaaatcgatgagagaaacagaccactttctgatgaagaattg
gatgctatgtttccagaaggatataaggttcttcctccaccagctggttatgtacctatt
cgcactccagctcgtaagcttacagcaactccaacacctttgggtggtatgactggattc
cacatgcagacagaagaccggactatgaagagtgtcaatgaccagccatctggcaatctt
ccattcctaaaaccggatgatatccaatactttgataaactgctggttgatgttgatgaa
tcaactctgagtcctgaagaacagaaagagagaaaaataatgaaattacttctgaaaata
aagaatggcacacctcctatgagaaaggctgcgttgcgacagatcactgataaagctcgg
gaatttggagcagggccgttgtttaatcagattctgcctctgctgatgtcaccaacgctt
gaagatcaggagcgtcacttgcttgtcaaagtcatcgacagaattctttacaaactggat
gacttggtccgaccgtatgtacacaagatccttgttgtcattgaaccactgctgattgat
gaagactactatgctagagtggaaggcagagaaataatttcaaacttggcgaaggctgct
ggtttggcaacaatgatctccacaatgcgaccggatattgataatatggatgaatatgtc
cgaaacacaacagctcgagcctttgctgtcgttgcctctgctttgggcattccttctctg
ttacccttcttgaaagctgtctgtaaaagcaaaaaatcctggcaggctaggcatactggc
atcaagattgtacagcagattgctattcttatgggttgtgctatcttgcctcatctgagg
agcttggttgaaattattgaacatggtctggtggatgagcagcagaaagttcgcaccatc
agtgctttggctattgctgctttggctgaggcagctactccctatggtattgagtcattt
gattccgttctgaagcctttgtggaagggtatacgtcaacacagaggaaagggtttggct
gcctttttgaaggctattggttacctgatcccactcatggatgctgaatatgcaaactat
tataccagagaagtcatgctaatccttatcagagagttccagtctcctgatgaagagatg
aaaaaaattgtgttaaaggtggtaaagcagtgttgtggtacggatggtgttgaagcaaac
tacattaaaacagagatcttgccaccttttttcaaacacttctggcagcacagaatggca
ttggacagaagaaattacagacagttggttgatacaactgtggaactggcaaataaagtt
ggagcagcggaaattatttctagaattgtggatgatctgaaagatgaggctgagcagtac
agaaaaatggtcatggaaacaattgagaagataatgggaaatctgggggcagcagacatt
gatcataaactggaagaacaacttattgatggtatcttgtacgcctttcaggaacagacc
acagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaaagg
gttaaaccctacttgccacaaatctgtggtacagttttgtggcgtttgaacaacaaatca
gctaaagttaggcagcaggctgctgacctgatctctcgtactgcagttgtcatgaaaact
tgtcaagaggaaaaactgatgggacacttgggtgttgtgttgtatgagtacctgggtgaa
gaatatcctgaagtactgggcagcatactcggagcacttaaggctattgtcaatgttata
ggaatgcacaagatgacaccaccaatcaaagatctgctgccacggcttacacctattttg
aagaacaggcatgagaaagtacaggaaaattgtattgatcttgttgggcgcattgcagac
cgaggtgcagaatatgtttctgcaagagaatggatgaggatctgctttgaactgcttgaa
ttattaaaagctcacaagaaagctatccgaagagccacagtgaacactttcggttatatt
gcgaaagctattggaccccacgatgtattggctacactgctaaataacttgaaagtacag
gaaaggcagaacagagtatgtactacagtagcaattgctattgtagctgaaacatgctca
cctttcacagtgctgcctgcactcatgaatgagtacagagttccagaactgaatgtccag
aatggtgtgttaaaatctctttctttcctgtttgaatacattggtgagatgggaaaagat
tacatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgtacac
agacaaacagccagtgctgtggtgcaacatatgtctcttggtgtttatgggtttggctgt
gaagattctcttaatcatttattaaattacgtatggcctaatgtgtttgaaacctctcct
cacgtcattcaggcagttatgggggctctggagggcctcagagttgctattggtccctgc
agaatgttgcagtattgtttacagggtttgtttcaccctgccaggaaggtcagagacgta
tattggaagatttataattcgatctacattggatcacaggatgctctgatagcacattat
ccaaggatctataatgatgaaaagaacacctatattcgttatgaacttgattacatctta
taa
DBGET
integrated database retrieval system
